Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001200.1

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Forward (+)

346085 .. 346621

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001200.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgaaggttgttgttgcgtatttgctcgctgttgtggacggcaacaccagcccctccgccaaggacttgacaaccattctcgcctctattggaactgaagctgacagcaacaggatcgagtcggtattgttagaactcgaggggaagaatgaaaccgaggtcattgcacatgcaagggataagttgacatccgtctttccatttctatttccacttccagttggtggcagcgaattgcatgtggccatgtctgcagctgctgagcagatggagaaggtacaagagaaggaagagtccgatggtgtaccaatggatttagattctaagattcaagcattaaatgatcggataattgcgctcccggatttacttcgtaccagtatagttgattttcttggactgaaatatgtgaaatgcgccttcaggaatggcgctttgtcgaaagattggaaagatctttggatttttactcccaatgtcaacttttctgataatggtttctgctcaactgctgatttcatagcatatgtggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

178

Amino Acids

19.49

Weight (kDa)

4.57

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	2 cut(s)	117, 406
AfaI	GTAC	3 cut(s)	279, 306, 376
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	332
AluBI	AGCT	2 cut(s)	101, 257
AluI	AGCT	2 cut(s)	101, 257
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	228, 254, 257
AspLEI	GCGC	3 cut(s)	358, 419, 434
AsuC2I	CCSGG	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	240, 244, 266
BccI	CCATC	2 cut(s)	262, 293
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	4 cut(s)	97, 131, 146, 180
BcnI	CCSGG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	435
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	3 cut(s)	229, 255, 258
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	3 cut(s)	230, 256, 259
Bme1390I	CCNGG	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	362
BoxI	GACNNNNGTC	1 cut(s)	191
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	60, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	218, 378
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	60, 156
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	218, 378
BseXI	GCAGC	3 cut(s)	240, 244, 266
BshFI	GGCC	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	224
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	3 cut(s)	114, 343, 454
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	218, 378
BssECI	CCNNGG	2 cut(s)	60, 156
BssMI	GATC	3 cut(s)	114, 343, 454
BssT1I	CCWWGG	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	261, 324
BstF5I	GGATG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	3 cut(s)	358, 419, 434
BstKTI	GATC	3 cut(s)	117, 346, 457
BstMBI	GATC	3 cut(s)	114, 343, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 251
BstNSI	RCATGY	2 cut(s)	173, 242
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	240, 244, 266
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	3 cut(s)	358, 419, 434
Csp6I	GTAC	3 cut(s)	278, 305, 375
CviAII	CATG	3 cut(s)	170, 239, 247
CviJI	RGCY	4 cut(s)	51, 101, 245, 257
CviKI_1	RGCY	4 cut(s)	51, 101, 245, 257
CviQI	GTAC	3 cut(s)	278, 305, 375
DdeI	CTNAG	2 cut(s)	261, 324
DpnI	GATC	3 cut(s)	116, 345, 456
DpnII	GATC	3 cut(s)	114, 343, 454
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	117, 406
Eco88I	CYCGRG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	3 cut(s)	173, 242, 250
FaiI	YATR	8 cut(s)	171, 240, 248, 383, 408, 521, 526, 528
FatI	CATG	3 cut(s)	169, 238, 246
FauNDI	CATATG	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	229, 255, 258
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	229, 255, 258
GlaI	GCGC	3 cut(s)	357, 418, 433
GluI	GCNGC	3 cut(s)	229, 255, 258
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	3 cut(s)	358, 419, 434
Hin1II	CATG	3 cut(s)	173, 242, 250
Hin6I	GCGC	3 cut(s)	356, 417, 432
HinP1I	GCGC	3 cut(s)	356, 417, 432
HincII	GTYRAC	2 cut(s)	186, 481
HindII	GTYRAC	2 cut(s)	186, 481
HinfI	GANTC	4 cut(s)	119, 293, 320, 328
HpaII	CCGG	1 cut(s)	362
Hpy166II	GTNNAC	4 cut(s)	37, 186, 305, 481
Hpy188I	TCNGA	3 cut(s)	298, 348, 490
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	4 cut(s)	37, 186, 305, 481
HpyAV	CCTTC	3 cut(s)	268, 280, 430
HpyCH4V	TGCA	4 cut(s)	167, 173, 238, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 251
HpyF3I	CTNAG	2 cut(s)	261, 324
Hsp92II	CATG	3 cut(s)	173, 242, 250
HspAI	GCGC	3 cut(s)	356, 417, 432
Kzo9I	GATC	3 cut(s)	114, 343, 454
LmnI	GCTCC	1 cut(s)	363
LpnPI	CCDG	6 cut(s)	61, 97, 231, 375, 391, 409
Lsp1109I	GCAGC	3 cut(s)	240, 244, 266
MalI	GATC	3 cut(s)	116, 345, 456
MboI	GATC	3 cut(s)	114, 343, 454
MboII	GAAGA	2 cut(s)	157, 302
MflI	RGATCY	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	2 cut(s)	233, 351
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	128, 302
MnlI	CCTC	4 cut(s)	64, 94, 133, 151
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	48, 251
NciI	CCSGG	1 cut(s)	362
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	3 cut(s)	114, 343, 454
NlaIII	CATG	3 cut(s)	173, 242, 250
NspI	RCATGY	2 cut(s)	173, 242
PaeR7I	CTCGAG	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	320, 328
PflMI	CCANNNNNTGG	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	230, 256, 259
PleI	GAGTC	2 cut(s)	127, 301
PpsI	GAGTC	2 cut(s)	127, 301
PshAI	GACNNNNGTC	1 cut(s)	191
PspXI	VCTCGAGB	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	279, 306, 376
RsaNI	GTAC	3 cut(s)	278, 305, 375
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	3 cut(s)	229, 255, 258
Sau3AI	GATC	3 cut(s)	114, 343, 454
SchI	GAGTC	2 cut(s)	128, 302
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	5 cut(s)	9, 103, 162, 259, 279
SfcI	CTRYAG	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	233, 351
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	3 cut(s)	117, 138, 440
TasI	AATT	2 cut(s)	233, 351
TfiI	GAWTC	2 cut(s)	320, 328
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseI	GCWGC	3 cut(s)	228, 254, 257
TspDTI	ATGAA	3 cut(s)	17, 165, 508
TspGWI	ACGGA	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	224
XceI	RCATGY	2 cut(s)	173, 242
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.