Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

12013926 .. 12015724

Gene Structure 1799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGCCAACATAGTAAAGAACTACAGAAAACTGATCCGGCCCGAACCCGGACCCGAAACCCGCGAAGTCCAATTAGAAACCCTAAAGGCTTCCTAGGAAAGAAAACCCTAGCAGCTCCACATAAAAGCTCTATATCAGGCCTCCGTTGCTTCATTTCGCACCCGCCTGCTGCTTACACCCTTCCTTCTTCACACTCATCCAGATCCAGAGCTTCTCTCTCTCGCTCAAAGATGAAGGTGATCGCTGCTTATTTGCTGGCTGTCTTGGGCGGCAAGACCAGCCCCACTGCGGAGGACATCAAGACCATCCTTGGCGCCGTTGGTGCTGAAGCTGATGAGGACAGAATTCAGCTTCTTCTGAAGGAAGTCAAGGGCAAGGACATCACTGAGCTGATTGCTTCTGGACGGGAGAAGTTGGCCTCTGTCCCATCTGGTGGCGGTGGTGCTGTTGCAGTTGCTGCCCCTGCTGGTGGCGCCGGTGGTGCTGCTCCGGCAGCAGCTGAGGCAAAGAAGGAAGAGAAGGTTGAGGAGAAAGAGGAGTCCGATGATGATATGGGCTTCAGTCTCTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

192

Amino Acids

19.9

Weight (kDa)

9.43

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	94 - 190	3e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	314, 473
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccII	CGCG	1 cut(s)	64
AciI	CCGC	5 cut(s)	62, 164, 270, 290, 438
AclWI	GGATC	2 cut(s)	29, 198
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	348, 380, 544
AcyI	GRCGYC	2 cut(s)	315, 474
AfiI	CCNNNNNNNGG	4 cut(s)	48, 289, 434, 470
AluBI	AGCT	7 cut(s)	116, 129, 212, 332, 352, 391, 500
AluI	AGCT	7 cut(s)	116, 129, 212, 332, 352, 391, 500
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	29, 198
AlwNI	CAGNNNCTG	2 cut(s)	458, 500
AoxI	GGCC	4 cut(s)	4, 39, 139, 417
ApeKI	GCWGC	7 cut(s)	113, 170, 245, 458, 485, 494, 497
ApoI	RAATTY	1 cut(s)	345
AspA2I	CCTAGG	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	317, 476
AspS9I	GGNCC	3 cut(s)	4, 40, 51
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	51
AvrII	CCTAGG	1 cut(s)	94
BanI	GGYRCC	2 cut(s)	314, 473
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	7 cut(s)	125, 157, 232, 445, 472, 506, 509
BccI	CCATC	2 cut(s)	314, 436
BceAI	ACGGC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	3 cut(s)	95, 110, 574
BfmI	CTRYAG	1 cut(s)	23
BfoI	RGCGCY	2 cut(s)	318, 477
BisI	GCNGC	8 cut(s)	114, 171, 246, 271, 459, 486, 495, 498
BlnI	CCTAGG	1 cut(s)	94
BlsI	GCNGC	8 cut(s)	115, 172, 247, 272, 460, 487, 496, 499
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	4, 40, 51
BmiI	GGNNCC	3 cut(s)	53, 316, 475
BmrFI	CCNGG	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
Bpu10I	CCTNAGC	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	49
BsaHI	GRCGYC	2 cut(s)	315, 474
BsaJI	CCNNGG	2 cut(s)	94, 310
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 289, 434, 470
Bse118I	RCCGGY	1 cut(s)	476
BseDI	CCNNGG	2 cut(s)	94, 310
BseGI	GGATG	2 cut(s)	197, 306
BseLI	CCNNNNNNNGG	4 cut(s)	48, 289, 434, 470
BseMII	CTCAG	2 cut(s)	378, 492
BseRI	GAGGAG	2 cut(s)	542, 551
BseXI	GCAGC	7 cut(s)	125, 157, 232, 445, 472, 506, 509
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	4 cut(s)	6, 41, 141, 419
BshNI	GGYRCC	2 cut(s)	314, 473
BsiSI	CCGG	4 cut(s)	38, 49, 477, 491
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	4 cut(s)	48, 289, 434, 470
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	4 cut(s)	6, 41, 141, 419
Bsp143I	GATC	3 cut(s)	34, 203, 240
BspACI	CCGC	5 cut(s)	62, 164, 270, 290, 438
BspANI	GGCC	4 cut(s)	6, 41, 141, 419
BspCNI	CTCAG	2 cut(s)	379, 493
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	53, 316, 475
BspPI	GGATC	2 cut(s)	29, 198
BspT107I	GGYRCC	2 cut(s)	314, 473
BsrFI	RCCGGY	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	94, 310
BssMI	GATC	3 cut(s)	34, 203, 240
BssNI	GRCGYC	2 cut(s)	315, 474
BssT1I	CCWWGG	2 cut(s)	94, 310
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	2 cut(s)	315, 474
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	168, 258
BstDEI	CTNAG	2 cut(s)	387, 501
BstF5I	GGATG	2 cut(s)	197, 306
BstFNI	CGCG	1 cut(s)	64
BstH2I	RGCGCY	2 cut(s)	318, 477
BstHHI	GCGC	2 cut(s)	317, 476
BstKTI	GATC	3 cut(s)	37, 206, 243
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	3 cut(s)	34, 203, 240
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	7 cut(s)	125, 157, 232, 445, 472, 506, 509
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	4 cut(s)	6, 41, 141, 419
BtsCI	GGATG	2 cut(s)	197, 306
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 384
Cac8I	GCNNGC	2 cut(s)	168, 258
CaiI	CAGNNNCTG	2 cut(s)	458, 500
CfoI	GCGC	2 cut(s)	317, 476
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	4, 40, 51
DdeI	CTNAG	2 cut(s)	387, 501
DinI	GGCGCC	2 cut(s)	316, 475
DpnI	GATC	3 cut(s)	36, 205, 242
DpnII	GATC	3 cut(s)	34, 203, 240
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	94, 310
Eco147I	AGGCCT	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	3 cut(s)	348, 380, 544
EcoRI	GAATTC	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	94, 310
EgeI	GGCGCC	2 cut(s)	316, 475
EheI	GGCGCC	2 cut(s)	316, 475
ErhI	CCWWGG	2 cut(s)	94, 310
FaiI	YATR	4 cut(s)	12, 123, 134, 554
FaqI	GGGAC	1 cut(s)	410
FauI	CCCGC	2 cut(s)	69, 171
Fnu4HI	GCNGC	8 cut(s)	114, 171, 246, 271, 459, 486, 495, 498
FokI	GGATG	2 cut(s)	184, 293
Fsp4HI	GCNGC	8 cut(s)	114, 171, 246, 271, 459, 486, 495, 498
FspBI	CTAG	3 cut(s)	95, 110, 574
GlaI	GCGC	2 cut(s)	316, 475
GluI	GCNGC	8 cut(s)	114, 171, 246, 271, 459, 486, 495, 498
HaeII	RGCGCY	2 cut(s)	318, 477
HaeIII	GGCC	4 cut(s)	6, 41, 141, 419
HapII	CCGG	4 cut(s)	38, 49, 477, 491
HhaI	GCGC	2 cut(s)	317, 476
Hin1I	GRCGYC	2 cut(s)	315, 474
Hin6I	GCGC	2 cut(s)	315, 474
HinP1I	GCGC	2 cut(s)	315, 474
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	4 cut(s)	38, 49, 477, 491
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	360, 544
Hpy188III	TCNNGA	4 cut(s)	201, 207, 301, 402
HpyAV	CCTTC	6 cut(s)	191, 195, 229, 355, 505, 514
HpyCH4V	TGCA	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	387, 501
Hsp92I	GRCGYC	2 cut(s)	315, 474
HspAI	GCGC	2 cut(s)	315, 474
KasI	GGCGCC	2 cut(s)	314, 473
Kzo9I	GATC	3 cut(s)	34, 203, 240
LmnI	GCTCC	2 cut(s)	121, 493
Lsp1109I	GCAGC	7 cut(s)	125, 157, 232, 445, 472, 506, 509
MaeI	CTAG	3 cut(s)	95, 110, 574
MalI	GATC	3 cut(s)	36, 205, 242
MboI	GATC	3 cut(s)	34, 203, 240
MboII	GAAGA	3 cut(s)	180, 347, 527
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	2 cut(s)	72, 345
Mly113I	GGCGCC	2 cut(s)	315, 474
MlyI	GAGTC	1 cut(s)	548
MnlI	CCTC	7 cut(s)	152, 286, 331, 430, 496, 520, 529
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	4 cut(s)	38, 49, 477, 491
MspR9I	CCNGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	64
NarI	GGCGCC	2 cut(s)	315, 474
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	3 cut(s)	34, 203, 240
NlaIV	GGNNCC	3 cut(s)	53, 316, 475
PceI	AGGCCT	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	8 cut(s)	115, 172, 247, 272, 460, 487, 496, 499
PleI	GAGTC	1 cut(s)	547
PluTI	GGCGCC	2 cut(s)	318, 477
PpsI	GAGTC	1 cut(s)	547
PspN4I	GGNNCC	3 cut(s)	53, 316, 475
PspPI	GGNCC	3 cut(s)	4, 40, 51
PstNI	CAGNNNCTG	2 cut(s)	458, 500
PsuI	RGATCY	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	500
SatI	GCNGC	8 cut(s)	114, 171, 246, 271, 459, 486, 495, 498
Sau3AI	GATC	3 cut(s)	34, 203, 240
Sau96I	GGNCC	3 cut(s)	4, 40, 51
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	9 cut(s)	118, 131, 214, 240, 334, 354, 393, 502, 525
SfcI	CTRYAG	1 cut(s)	23
SfoI	GGCGCC	2 cut(s)	316, 475
SgrAI	CRCCGGYG	1 cut(s)	476
SinI	GGWCC	1 cut(s)	51
Sse9I	AATT	2 cut(s)	72, 345
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	5 cut(s)	62, 164, 270, 290, 438
SspDI	GGCGCC	2 cut(s)	314, 473
SspMI	CTAG	3 cut(s)	95, 110, 574
StuI	AGGCCT	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	94, 310
TasI	AATT	2 cut(s)	72, 345
TauI	GCSGC	1 cut(s)	273
TscAI	CASTG	2 cut(s)	292, 391
TseI	GCWGC	7 cut(s)	113, 170, 245, 458, 485, 494, 497
TspDTI	ATGAA	2 cut(s)	142, 248
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	292, 391
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	345
XmaJI	CCTAGG	1 cut(s)	94
XspI	CTAG	3 cut(s)	95, 110, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.