Rw2G048840

Belongs to the eukaryotic ribosomal protein P1 P2 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
76370658 .. 76372226
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048840.1

Sequence Viewer

Length: 276 bp
ATGAAGGTGATCGCTGCTTATTTGCTCGCTGTGTTGGGGGGCAAGACCAGAACAGAAGACATCAAGAGCATCCTTGGCTCCGGGTCGGGTTTTAATGTTCATTGTGCTAACACATTCATCTTTTTCATTGTTGGTGCTGAAGCAGATGATGACAGGCTTCAGTTTCTTCTCAAGGAAGTTCAGGGTAAGGACATAACAGAACTTATTGCCTCTGGAAGGGAGAAGTTGGCTTTTGCTCCGAGCTTAGTTAGTTGGTTTGATACTTTGATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

5.21

Isoelectric Point (pI)

16.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 143, 159
AfiI CCNNNNNNNGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 14
AseI ATTAAT 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 82
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 216
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 216
Bsp143I GATC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 27
CviJI RGCY 4 cut(s) 78, 157, 230, 243
CviKI_1 RGCY 4 cut(s) 78, 157, 230, 243
DdeI CTNAG 1 cut(s) 244
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 73
Eco57I CTGAAG 2 cut(s) 143, 159
EcoNI CCTNNNNNAGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaiI YATR 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 15
HapII CCGG 1 cut(s) 81
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 64, 213
HpyAV CCTTC 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 244
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 83, 241
LpnPI CCDG 5 cut(s) 61, 94, 139, 167, 198
LweI GCATC 1 cut(s) 78
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 68, 158
MluCI AATT 1 cut(s) 271
MnlI CCTC 1 cut(s) 220
MseI TTAA 2 cut(s) 93, 270
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 82
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 93, 270
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 82
SetI ASST 2 cut(s) 9, 245
SfaNI GCATC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 73
TasI AATT 1 cut(s) 271
Tru1I TTAA 2 cut(s) 93, 270
Tru9I TTAA 2 cut(s) 93, 270
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 17, 89, 106, 115
VspI ATTAAT 1 cut(s) 270
XagI CCTNNNNNAGG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.