Rroxscaffold_6G00416420

Belongs to the eukaryotic ribosomal protein P1 P2 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
38425608 .. 38426387
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416420.1

Sequence Viewer

Length: 231 bp
ATGAAGGTGATCGCTGCTTATTTGCTCGCCGTGTTGGGGGGCAAGACCAGAACCGAAGACATCAAGAGCATCCTTGGTGCCTGGTGCTTTGAAGCGTATGATGACAGCTTCAGCTTTCTTCTCAAGGAAGTTCGGGGTAAGGACATAACAGAGCTTATTGCCTCCGGAAGGGAGCAGCGGGAAGTTGCTTTTGATTTGGTAGCTGTGATGTCGGTGGAGAATTATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.49

Weight (kDa)

4.79

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 36, 168
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 4 cut(s) 108, 114, 154, 203
AluI AGCT 4 cut(s) 108, 114, 154, 203
Aor13HI TCCGGA 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 14, 175
AsuHPI GGTGA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 82
BisI GCNGC 2 cut(s) 15, 176
BlsI GCNGC 2 cut(s) 16, 177
Bme1390I CCNGG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 168
BseAI TCCGGA 1 cut(s) 164
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 36, 168
BseXI GCAGC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 2 cut(s) 36, 168
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 27
CviJI RGCY 4 cut(s) 108, 114, 154, 203
CviKI_1 RGCY 4 cut(s) 108, 114, 154, 203
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaiI YATR 3 cut(s) 99, 146, 225
FauI CCCGC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 15, 176
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 15, 176
GluI GCNGC 2 cut(s) 15, 176
HapII CCGG 1 cut(s) 165
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 64, 165
HpyAV CCTTC 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 164
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 61, 67, 94, 178
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 78
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 68, 110
MluCI AATT 1 cut(s) 220
MnlI CCTC 1 cut(s) 172
MroI TCCGGA 1 cut(s) 164
MseI TTAA 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 16, 177
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 229
SatI GCNGC 2 cut(s) 15, 176
Sau3AI GATC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 82
SetI ASST 5 cut(s) 9, 110, 116, 156, 205
SfaNI GCATC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 220
SsiI CCGC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 73
TasI AATT 1 cut(s) 220
Tru1I TTAA 1 cut(s) 229
Tru9I TTAA 1 cut(s) 229
TseI GCWGC 2 cut(s) 14, 175
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.