Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

94043576 .. 94044709

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGGTTGTCGCCGCGTACTTGCTCGCTGTTTTGGGCGGCAACGCCAGCCCCTCCGCCAAGGACCTGAAGTCCATTCTCGCCTCCGTGGGAGCTGAGGCCGAGAGCGACAGGATTGAGTTGCTATTGAAGGAACTCAAGGGGAAGGATATCACCGAGATCATTGCATCTGGAAGGGAGAAGCTGGCTTCCGTGCCCTCTGGTGGTGGTGGAGTGGCGGTTGCCGCGTCTGCAGCTGCTGGCGGTGGTGCTGCAGCACCTGCTGCTGCTGAGCAGAAGAAGGAGGAGAAGGTAGAAGAGAAGGAAGAGTCCGATGATGACATGGGCTTCAGCCTCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

114

Amino Acids

11.45

Weight (kDa)

4.64

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 113	4.2e-26	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
AccII	CGCG	2 cut(s)	17, 227
AciI	CCGC	6 cut(s)	15, 39, 57, 218, 225, 243
AcuI	CTGAAG	2 cut(s)	89, 313
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	130
AhdI	GACNNNNNGTC	1 cut(s)	70
AluBI	AGCT	3 cut(s)	95, 184, 236
AluI	AGCT	3 cut(s)	95, 184, 236
AlwNI	CAGNNNCTG	2 cut(s)	239, 260
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	6 cut(s)	233, 236, 251, 254, 263, 266
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	6 cut(s)	223, 238, 245, 250, 253, 266
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BfmI	CTRYAG	2 cut(s)	231, 252
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	9 cut(s)	15, 40, 225, 234, 237, 252, 255, 264, 267
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	9 cut(s)	16, 41, 226, 235, 238, 253, 256, 265, 268
Bme18I	GGWCC	1 cut(s)	64
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	64
BmsI	GCATC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	60, 87
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	60, 87
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	87, 261
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	6 cut(s)	223, 238, 245, 250, 253, 266
Bsh1236I	CGCG	2 cut(s)	17, 227
BshFI	GGCC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	270
BspACI	CCGC	6 cut(s)	15, 39, 57, 218, 225, 243
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	88, 262
BspFNI	CGCG	2 cut(s)	17, 227
BspMAI	CTGCAG	2 cut(s)	235, 256
BspMI	ACCTGC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	60, 87
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	291, 300
BstAPI	GCANNNNNTGC	2 cut(s)	260, 263
BstC8I	GCNNGC	4 cut(s)	27, 49, 186, 241
BstDEI	CTNAG	2 cut(s)	96, 270
BstDSI	CCRYGG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	17, 227
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 224, 230, 233, 260, 263
BstSFI	CTRYAG	2 cut(s)	231, 252
BstSLI	GKGCMC	1 cut(s)	198
BstUI	CGCG	2 cut(s)	17, 227
BstV1I	GCAGC	6 cut(s)	223, 238, 245, 250, 253, 266
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	4 cut(s)	27, 49, 186, 241
CaiI	CAGNNNCTG	2 cut(s)	239, 260
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	8 cut(s)	51, 95, 101, 184, 188, 236, 327, 333
CviKI_1	RGCY	8 cut(s)	51, 95, 101, 184, 188, 236, 327, 333
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	96, 270
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	291, 300
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EarI	CTCTTC	2 cut(s)	291, 300
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	89, 313
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	325
FaiI	YATR	1 cut(s)	323
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	9 cut(s)	15, 40, 225, 234, 237, 252, 255, 264, 267
Fsp4HI	GCNGC	9 cut(s)	15, 40, 225, 234, 237, 252, 255, 264, 267
GluI	GCNGC	9 cut(s)	15, 40, 225, 234, 237, 252, 255, 264, 267
HaeIII	GGCC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	325
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	6 cut(s)	124, 139, 168, 274, 283, 295
HpyCH4V	TGCA	3 cut(s)	167, 233, 254
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 224, 230, 233, 260, 263
HpyF3I	CTNAG	2 cut(s)	96, 270
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	8 cut(s)	61, 80, 97, 156, 170, 186, 225, 273
Lsp1109I	GCAGC	6 cut(s)	223, 238, 245, 250, 253, 266
LweI	GCATC	1 cut(s)	176
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	289, 308, 317
MhlI	GDGCHC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	64, 91, 94, 208, 277, 344
MspA1I	CMGCKG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	17, 227
MwoI	GCNNNNNNNGC	6 cut(s)	48, 224, 230, 233, 260, 263
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	325
NmeAIII	GCCGAG	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	268
PkrI	GCNGC	9 cut(s)	16, 41, 226, 235, 238, 253, 256, 265, 268
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	2 cut(s)	235, 256
PstNI	CAGNNNCTG	2 cut(s)	239, 260
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SatI	GCNGC	9 cut(s)	15, 40, 225, 234, 237, 252, 255, 264, 267
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	7 cut(s)	9, 69, 97, 186, 238, 262, 294
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	2 cut(s)	231, 252
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	6 cut(s)	15, 39, 57, 218, 225, 243
StyI	CCWWGG	1 cut(s)	60
TauI	GCSGC	3 cut(s)	17, 42, 227
TseI	GCWGC	6 cut(s)	233, 236, 251, 254, 263, 266
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	76, 181
VpaK11BI	GGWCC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.