Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Forward (+)

56511838 .. 56512327

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0399600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACGGATCCGATCTCCAGCCTTGCGGCTACTTTTACTCTCAACGACAACGGTCATGTCGATCTCGGCTTAGCCAGGGAAGCGGCGTTGCAGGACTCTCACCATTACATGGTGGGACAGTTGCTTACTCTGAAGCCAAATCTGGCAGGATTCATTGGATCGATGCCCACTATATGGCGCATGAAGGGGGGGTCTTTCCATCAGAGCGCCCCGTATGATGGGATTGCTAATGTGGATTCAATCCTTCTTCATTCTCTGGAGTTGTGGATAACTGTTCGAGGGCTTCTTCCTACGCTTCAGAACAAGCTGTCCCTATCCATGATCGGATCTGCTATTGGTAGGGTGTTGAGGCTTGATACGGTAGCCTTGAAGCGTAAGGATGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

129

Amino Acids

14.07

Weight (kDa)

6.5

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	109, 174
AciI	CCGC	2 cut(s)	26, 83
AclWI	GGATC	4 cut(s)	2, 15, 166, 334
AcuI	CTGAAG	2 cut(s)	152, 281
AfiI	CCNNNNNNNGG	3 cut(s)	109, 174, 218
AgsI	TTSAA	2 cut(s)	240, 370
AjnI	CCWGG	1 cut(s)	74
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
AlwI	GGATC	4 cut(s)	2, 15, 166, 334
AspLEI	GCGC	2 cut(s)	180, 209
AsuHPI	GGTGA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	7
BccI	CCATC	2 cut(s)	207, 212
BciT130I	CCWGG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	2 cut(s)	27, 84
BlpI	GCTNAGC	1 cut(s)	70
BlsI	GCNGC	2 cut(s)	28, 85
Bme1390I	CCNGG	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	153
BoxI	GACNNNNGTC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 174, 218
BseBI	CCWGG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	109, 174, 218
BshVI	ATCGAT	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	129, 295
BslI	CCNNNNNNNGG	3 cut(s)	109, 174, 218
BsmFI	GGGAC	2 cut(s)	129, 295
Bsp143I	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
Bsp1720I	GCTNAGC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	26, 83
BspDI	ATCGAT	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	2, 15, 166, 334
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	4 cut(s)	53, 120, 274, 361
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	180, 209
BstKTI	GATC	6 cut(s)	10, 15, 64, 161, 324, 329
BstMBI	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	7, 326
BstYI	RGATCY	2 cut(s)	7, 326
Bsu15I	ATCGAT	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	385
CfoI	GCGC	2 cut(s)	180, 209
ClaI	ATCGAT	1 cut(s)	161
CviAII	CATG	4 cut(s)	56, 109, 181, 319
CviJI	RGCY	9 cut(s)	21, 29, 69, 74, 136, 283, 307, 352, 365
CviKI_1	RGCY	9 cut(s)	21, 29, 69, 74, 136, 283, 307, 352, 365
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	6 cut(s)	9, 14, 63, 160, 323, 328
DpnII	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
Eco57I	CTGAAG	2 cut(s)	152, 281
EcoRII	CCWGG	1 cut(s)	74
FaeI	CATG	4 cut(s)	59, 112, 184, 322
FaiI	YATR	7 cut(s)	57, 110, 173, 175, 182, 216, 320
FaqI	GGGAC	2 cut(s)	129, 295
FatI	CATG	4 cut(s)	55, 108, 180, 318
Fnu4HI	GCNGC	2 cut(s)	27, 84
Fsp4HI	GCNGC	2 cut(s)	27, 84
GlaI	GCGC	2 cut(s)	179, 208
GluI	GCNGC	2 cut(s)	27, 84
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	210
HhaI	GCGC	2 cut(s)	180, 209
Hin1II	CATG	4 cut(s)	59, 112, 184, 322
Hin6I	GCGC	2 cut(s)	178, 207
HinP1I	GCGC	2 cut(s)	178, 207
HinfI	GANTC	3 cut(s)	95, 150, 236
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	5 cut(s)	12, 132, 204, 300, 326
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	178, 254
HpyCH4III	ACNGT	4 cut(s)	53, 120, 274, 361
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	4 cut(s)	59, 112, 184, 322
HspAI	GCGC	2 cut(s)	178, 207
Kzo9I	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
LpnPI	CCDG	7 cut(s)	31, 61, 77, 88, 128, 132, 242
LweI	GCATC	1 cut(s)	153
MalI	GATC	6 cut(s)	9, 14, 63, 160, 323, 328
MboI	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
MboII	GAAGA	2 cut(s)	239, 278
MflI	RGATCY	2 cut(s)	7, 326
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	3 cut(s)	272, 342, 376
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
NlaIII	CATG	4 cut(s)	59, 112, 184, 322
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	150, 236
PflMI	CCANNNNNTGG	2 cut(s)	109, 174
PkrI	GCNGC	2 cut(s)	28, 85
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	7, 326
SatI	GCNGC	2 cut(s)	27, 84
Sau3AI	GATC	6 cut(s)	7, 12, 61, 158, 321, 326
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	153
SsiI	CCGC	2 cut(s)	26, 83
StyD4I	CCNGG	1 cut(s)	74
TaaI	ACNGT	4 cut(s)	53, 120, 274, 361
TaqI	TCGA	3 cut(s)	60, 161, 277
TauI	GCSGC	2 cut(s)	29, 86
TfiI	GAWTC	2 cut(s)	150, 236
TspDTI	ATGAA	3 cut(s)	142, 197, 239
TspGWI	ACGGA	1 cut(s)	20
Van91I	CCANNNNNTGG	2 cut(s)	109, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.