Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

26278637 .. 26278795

Gene Structure 159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAAGGTTGTTGCTGCGTATTTGCTCACTGTTCTGGACGGCAACACCAGCCCCTCTGTCGAGGACTTGAAAACCATTCTCGCCTCCGTTGGAACTGAAGTCGACAGCGACAGGATCAAGTTGGTATTGTCAGAACTCGAAGGGAAGAATGAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

52

Amino Acids

5.56

Weight (kDa)

4.4

Isoelectric Point (pI)

21.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	70
AlwI	GGATC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	55
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	122
BssMI	GATC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	31
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	27
CviJI	RGCY	1 cut(s)	51
CviKI_1	RGCY	1 cut(s)	51
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	3 cut(s)	20, 61, 97
MaeII	ACGT	1 cut(s)	155
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	55, 64, 94
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	16
SalI	GTCGAC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	114
SetI	ASST	2 cut(s)	9, 158
SgeI	CNNG	8 cut(s)	47, 60, 73, 79, 92, 124, 130, 149
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	60, 102, 138
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.