Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

25524157 .. 25524838

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAAGGTTGTTATTGCATATTTGCTCGCTATTGTGGACAGCAACGCCAGCCCCTCCGCCGAGGACTTGAAGACCAGTATCTCCTCCATTGGAACTGAGGCCTACAGCTACAGGATCGGGCTTGTATTGTCGGAACTCAAGGGGAAGGATGTAACTGAGATCATTGCATATATAAGGAAGTTGGTACCCATCTTTCCATTTCGAGCTCCAGTTCCAGTTTCTGGCATCAGGTTGCTTGTGGCCGCGCCTGCAGCTGCTGAGCAAATGGAGCAGAAGGTACAAGAGAAGGAAGAGTCCAATGTTGTAAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

105

Amino Acids

11.28

Weight (kDa)

5.41

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 99	5.4e-09	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	57, 243
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	240
AfaI	GTAC	2 cut(s)	186, 279
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	3 cut(s)	108, 206, 254
AluI	AGCT	3 cut(s)	108, 206, 254
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	2 cut(s)	221, 257
AoxI	GGCC	2 cut(s)	99, 240
ApeKI	GCWGC	2 cut(s)	251, 254
Asp718I	GGTACC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	241, 263
BccI	CCATC	1 cut(s)	197
BfmI	CTRYAG	3 cut(s)	103, 109, 249
BisI	GCNGC	3 cut(s)	243, 252, 255
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	3 cut(s)	244, 253, 256
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	3 cut(s)	75, 209, 215
Bse3DI	GCAATG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	87, 147, 249
BseNI	ACTGG	3 cut(s)	75, 209, 215
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	241, 263
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	101, 242
BshNI	GGYRCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	221
BsnI	GGCC	2 cut(s)	101, 242
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	114, 159
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	2 cut(s)	57, 243
BspANI	GGCC	2 cut(s)	101, 242
BspCNI	CTCAG	3 cut(s)	88, 148, 250
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	186
BspMAI	CTGCAG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	75, 209, 215
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	114, 159
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	3 cut(s)	27, 49, 249
BstDEI	CTNAG	3 cut(s)	96, 156, 258
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	117, 162
BstMBI	GATC	2 cut(s)	114, 159
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 248, 251, 268
BstSFI	CTRYAG	3 cut(s)	103, 109, 249
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	241, 263
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	101, 242
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	3 cut(s)	27, 49, 249
CaiI	CAGNNNCTG	2 cut(s)	221, 257
CfoI	GCGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	185, 278
CviJI	RGCY	7 cut(s)	51, 101, 108, 121, 206, 242, 254
CviKI_1	RGCY	7 cut(s)	51, 101, 108, 121, 206, 242, 254
CviQI	GTAC	2 cut(s)	185, 278
DdeI	CTNAG	3 cut(s)	96, 156, 258
DpnI	GATC	2 cut(s)	116, 161
DpnII	GATC	2 cut(s)	114, 159
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	206
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	208
FaiI	YATR	4 cut(s)	19, 169, 171, 173
Fnu4HI	GCNGC	3 cut(s)	243, 252, 255
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	243, 252, 255
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	243, 252, 255
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	101, 242
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	139, 268, 280
HpyCH4V	TGCA	3 cut(s)	17, 167, 251
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 248, 251, 268
HpyF3I	CTNAG	3 cut(s)	96, 156, 258
HspAI	GCGC	1 cut(s)	245
KpnI	GGTACC	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	114, 159
LmnI	GCTCC	2 cut(s)	211, 268
LpnPI	CCDG	8 cut(s)	61, 88, 97, 207, 214, 222, 228, 261
Lsp1109I	GCAGC	2 cut(s)	241, 263
LweI	GCATC	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	116, 161
MboI	GATC	2 cut(s)	114, 159
MboII	GAAGA	2 cut(s)	82, 302
MhlI	GDGCHC	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	4 cut(s)	55, 64, 91, 94
MspA1I	CMGCKG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	48, 248, 251, 268
NdeII	GATC	2 cut(s)	114, 159
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	244, 253, 256
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	2 cut(s)	221, 257
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	186, 279
RsaNI	GTAC	2 cut(s)	185, 278
SacI	GAGCTC	1 cut(s)	208
SatI	GCNGC	3 cut(s)	243, 252, 255
Sau3AI	GATC	2 cut(s)	114, 159
SchI	GAGTC	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	6 cut(s)	9, 110, 208, 233, 256, 279
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	3 cut(s)	103, 109, 249
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	57, 243
SstI	GAGCTC	1 cut(s)	208
StuI	AGGCCT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	202
TauI	GCSGC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	251, 254
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.