Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Reverse (-)

15735798 .. 15737646

Gene Structure 1849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1160300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTATATTATGTATCTTTATATGAAGGTTGTTGCTGCATACTTGCTCGCTGTTTTGGGAGGGAAGACGAGCCCCTCAGCTGCTGACTTGAAGGACATTCTTGGATCAGTTGGAGCCGAGGCTGACAGTGACAAGATTGAGTTGCTATTGTCCGAAGTCAAGGGAAAAGATATCACCGAGCTAATTGCATCTGGAAGGGAGAAGTTGGCATCTGTTCCATCTGGTGGCGGTGCAGTTGCTTATTCCGCACCTGCAGCTGGCGGTGGTGGTGGGGCTGCTGCTCCTGCCGCTGCCGAGCAGAAGAAGGAGGAGAAGGTGGAAGAAAAGGAAGAATCAGACGATGATATGGGTTTCAGCCTTTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

123

Amino Acids

12.47

Weight (kDa)

4.46

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	24 - 121	5.8e-25	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	224
AciI	CCGC	4 cut(s)	228, 246, 261, 288
AclWI	GGATC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	224, 257
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	3 cut(s)	80, 181, 257
AluI	AGCT	3 cut(s)	80, 181, 257
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	83
ApeKI	GCWGC	6 cut(s)	35, 80, 254, 275, 278, 290
AsuHPI	GGTGA	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	71
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	6 cut(s)	22, 67, 262, 265, 266, 277
BccI	CCATC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	7 cut(s)	36, 81, 255, 276, 279, 288, 291
BlsI	GCNGC	7 cut(s)	37, 82, 256, 277, 280, 289, 292
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	2 cut(s)	197, 218
BpiI	GAAGAC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 257
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	224, 257
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	6 cut(s)	22, 67, 262, 265, 266, 277
BsgI	GTGCAG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	224, 257
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	104
BspACI	CCGC	4 cut(s)	228, 246, 261, 288
BspCNI	CTCAG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	48, 259
BstDEI	CTNAG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 254, 284, 287
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	6 cut(s)	22, 67, 262, 265, 266, 277
BstV2I	GAAGAC	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	2 cut(s)	48, 259
CaiI	CAGNNNCTG	1 cut(s)	83
CviJI	RGCY	8 cut(s)	72, 80, 116, 122, 181, 257, 275, 357
CviKI_1	RGCY	8 cut(s)	72, 80, 116, 122, 181, 257, 275, 357
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	74
Eco32I	GATATC	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	74
FaiI	YATR	6 cut(s)	6, 11, 21, 23, 40, 347
Fnu4HI	GCNGC	7 cut(s)	36, 81, 255, 276, 279, 288, 291
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	7 cut(s)	36, 81, 255, 276, 279, 288, 291
GluI	GCNGC	7 cut(s)	36, 81, 255, 276, 279, 288, 291
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	154, 337
Hpy188III	TCNNGA	1 cut(s)	192
HpyAV	CCTTC	5 cut(s)	19, 85, 189, 298, 307
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	4 cut(s)	38, 188, 233, 254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 254, 284, 287
HpyF3I	CTNAG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	113, 286
LpnPI	CCDG	5 cut(s)	177, 207, 243, 264, 297
Lsp1109I	GCAGC	6 cut(s)	22, 67, 262, 265, 266, 277
LweI	GCATC	2 cut(s)	197, 218
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	4 cut(s)	76, 313, 332, 341
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	53, 85, 112, 301
MspA1I	CMGCKG	3 cut(s)	80, 257, 290
MwoI	GCNNNNNNNGC	4 cut(s)	245, 254, 284, 287
NdeII	GATC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	2 cut(s)	142, 319
NmuCI	GTSAC	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	7 cut(s)	37, 82, 256, 277, 280, 289, 292
PspN4I	GGNNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	2 cut(s)	80, 257
SatI	GCNGC	7 cut(s)	36, 81, 255, 276, 279, 288, 291
Sau3AI	GATC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	6 cut(s)	30, 82, 183, 253, 259, 318
SfaNI	GCATC	2 cut(s)	197, 218
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	4 cut(s)	228, 246, 261, 288
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	363
TasI	AATT	1 cut(s)	183
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	6 cut(s)	35, 80, 254, 275, 278, 290
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.