Rroxscaffold_6G00408850

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001160
Physical Location & Seq
Forward (+)
31348486 .. 31350205
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408850.1

Sequence Viewer

Length: 342 bp
ATGAAGGTGATCGCTGCTTATTTGCTCGCTGTGTTGGGCGGCAAGACCAGCCCTACTGCTGAAGACATCAAGAGCATCCTTGGCGCTGTTGGTGCTGAAGCAGATGATGACAGGCTTCAGTTTCTTCTCAAGGAAGTTCAGGGTAAGGACATAACAGAGCTTATTGCCTCTGGAAGGGAGAAGTTGGCTTCTGTTCCATCTGGTGGTGGAGGTGCTGTTGCTGTGGCTGCCCCTGCTGCTGGCGGCGGTGCTGCTCCTGCTGCAGCTGAGGCAAAGAAGGAAGAAAAGGTTGAGGAGAAAGAGGAGTCTGATGATGATATGGGCTTCAGTCTGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

113

Amino Acids

11.4

Weight (kDa)

4.46

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 112 1.8e-26 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 3 cut(s) 39, 243, 246
AcuI CTGAAG 4 cut(s) 81, 101, 117, 310
AfiI CCNNNNNNNGG 3 cut(s) 174, 203, 239
AluBI AGCT 2 cut(s) 160, 266
AluI AGCT 2 cut(s) 160, 266
ApeKI GCWGC 6 cut(s) 14, 227, 236, 251, 260, 263
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 5 cut(s) 214, 223, 238, 247, 275
BccI CCATC 1 cut(s) 205
BfaI CTAG 1 cut(s) 340
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 8 cut(s) 15, 40, 228, 237, 244, 252, 261, 264
BlsI GCNGC 8 cut(s) 16, 41, 229, 238, 245, 253, 262, 265
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 203, 239
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 3 cut(s) 174, 203, 239
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 2 cut(s) 308, 317
BseXI GCAGC 5 cut(s) 214, 223, 238, 247, 275
BslI CCNNNNNNNGG 3 cut(s) 174, 203, 239
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 3 cut(s) 39, 243, 246
BspCNI CTCAG 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 27, 241
BstDEI CTNAG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 9 cut(s) 48, 81, 92, 227, 233, 236, 257, 260, 269
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 5 cut(s) 214, 223, 238, 247, 275
BstV2I GAAGAC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 27, 241
CfoI GCGC 1 cut(s) 86
CviJI RGCY 7 cut(s) 51, 115, 160, 188, 227, 266, 324
CviKI_1 RGCY 7 cut(s) 51, 115, 160, 188, 227, 266, 324
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 79
Eco57I CTGAAG 4 cut(s) 81, 101, 117, 310
EcoNI CCTNNNNNAGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaiI YATR 2 cut(s) 152, 320
Fnu4HI GCNGC 8 cut(s) 15, 40, 228, 237, 244, 252, 261, 264
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 8 cut(s) 15, 40, 228, 237, 244, 252, 261, 264
FspBI CTAG 1 cut(s) 340
GlaI GCGC 1 cut(s) 85
GluI GCNGC 8 cut(s) 15, 40, 228, 237, 244, 252, 261, 264
HaeII RGCGCY 1 cut(s) 87
HhaI GCGC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 305
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 2 cut(s) 70, 171
HpyAV CCTTC 2 cut(s) 168, 271
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 9 cut(s) 48, 81, 92, 227, 233, 236, 257, 260, 269
HpyF3I CTNAG 1 cut(s) 267
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 8 cut(s) 61, 97, 125, 156, 186, 225, 246, 270
Lsp1109I GCAGC 5 cut(s) 214, 223, 238, 247, 275
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 340
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 74, 116, 293
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 5 cut(s) 178, 203, 262, 286, 295
MspA1I CMGCKG 1 cut(s) 266
MwoI GCNNNNNNNGC 9 cut(s) 48, 81, 92, 227, 233, 236, 257, 260, 269
NdeII GATC 1 cut(s) 9
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 8 cut(s) 16, 41, 229, 238, 245, 253, 262, 265
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 266
SatI GCNGC 8 cut(s) 15, 40, 228, 237, 244, 252, 261, 264
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 314
SetI ASST 5 cut(s) 9, 162, 214, 268, 291
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SsiI CCGC 3 cut(s) 39, 243, 246
SspMI CTAG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 79
TauI GCSGC 2 cut(s) 42, 246
TseI GCWGC 6 cut(s) 14, 227, 236, 251, 260, 263
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 172
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.