Rw1G008940

Belongs to the eukaryotic ribosomal protein P1 P2 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
19660121 .. 19660886
766 bp
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UTR
Exon/CDS
Intron
Rw1G008940.1

Sequence Viewer

Length: 180 bp
ATGAAGGTGATCGCTGCTTATTTGCTTGCTGTGTTGGGGGACAAGACCAGCCCTACTGTCGAAGACTTCAAGAGCATCCCTGGCGCCGTTGGTGCTGAAGCAGATGATAACAGGCTTCAGTTTCTTCTCAAAGAAGTTCAGGGTAAGGACATAACAGAGCTTATTGCCTCTGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.3

Weight (kDa)

4.81

Isoelectric Point (pI)

12.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AcuI CTGAAG 2 cut(s) 101, 117
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 81, 92
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 86
CviJI RGCY 3 cut(s) 51, 115, 160
CviKI_1 RGCY 3 cut(s) 51, 115, 160
DinI GGCGCC 1 cut(s) 85
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 101, 117
EcoNI CCTNNNNNAGG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 79
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
FaiI YATR 1 cut(s) 152
FaqI GGGAC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 87
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 84
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 70, 171
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 92
Hsp92I GRCGYC 1 cut(s) 84
HspAI GCGC 1 cut(s) 84
KasI GGCGCC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 61, 66, 93, 97, 125, 156
LweI GCATC 1 cut(s) 84
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 74, 116
Mly113I GGCGCC 1 cut(s) 84
MnlI CCTC 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 81, 92
NarI GGCGCC 1 cut(s) 84
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 16
PluTI GGCGCC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 85
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 81
SetI ASST 3 cut(s) 9, 162, 179
SfaNI GCATC 1 cut(s) 84
SfoI GGCGCC 1 cut(s) 85
SgeI CNNG 8 cut(s) 38, 55, 60, 82, 92, 93, 124, 152
SspDI GGCGCC 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 60
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.