Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Forward (+)

38732189 .. 38732671

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g39030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATTTTATTTTTTTTCTTTTTAAATATCTGGAGCTTGAAGCACATTTTTTTTTCCCGCATTCGGCTGCACATTTACCCTTTCTCTCCACACTCCGCAGATCCAGAGCCCTCTCAAGCAGAGATGAAGGTGGTCGCTGCATACTTGTTGGCTGTGTTGGGCGGCAAGACCACCCCTACCGCCGAAGATCTCAAGGACAACCTTGGCTCCGTTGGTGCCGAGGCTGATGATGACAGGATTCAACTTCTGCCTTCCAAAGTCAAGGGTGAGGACATCACAGAGCTAATTGCCTCTGGAAGGGAAAAGTTGGCCTCCGTACCAGCTGGTGGAGGTGGTGCTGTTGCAGTTGCTGCAACTGGTTGTGGTTTTGGTGGTGGTGGTGCTGCTACCGCTGCTGCGGCTGAGGCAAAGAAAGAGGAGAAGAAAATAATGATATCAGGGGAGAAAAAAAGAAAGAGAAAGAAATGGGTGAGAGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

161

Amino Acids

16.99

Weight (kDa)

9.35

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	59 - 142	5.4e-12	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	6 cut(s)	58, 96, 162, 180, 390, 398
AclWI	GGATC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	3 cut(s)	63, 297, 326
AgsI	TTSAA	2 cut(s)	40, 242
AluBI	AGCT	4 cut(s)	36, 283, 323, 480
AluI	AGCT	4 cut(s)	36, 283, 323, 480
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	6 cut(s)	67, 137, 350, 383, 392, 395
AsuHPI	GGTGA	2 cut(s)	278, 481
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	6 cut(s)	54, 124, 337, 370, 379, 382
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	8 cut(s)	68, 138, 163, 351, 384, 393, 396, 399
BlsI	GCNGC	8 cut(s)	69, 139, 164, 352, 385, 394, 397, 400
BmiI	GGNNCC	2 cut(s)	208, 217
BpmI	CTGGAG	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	99, 176
BsaJI	CCNNGG	2 cut(s)	202, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 297, 326
Bse1I	ACTGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	202, 219
BseLI	CCNNNNNNNGG	3 cut(s)	63, 297, 326
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	6 cut(s)	54, 124, 337, 370, 379, 382
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	63, 297, 326
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	100, 187
BspACI	CCGC	6 cut(s)	58, 96, 162, 180, 390, 398
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	208, 217
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	202, 219
BssMI	GATC	2 cut(s)	100, 187
BssT1I	CCWWGG	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstKTI	GATC	2 cut(s)	103, 190
BstMBI	GATC	2 cut(s)	100, 187
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 389, 392, 398, 404
BstV1I	GCAGC	6 cut(s)	54, 124, 337, 370, 379, 382
BstX2I	RGATCY	2 cut(s)	100, 187
BstYI	RGATCY	2 cut(s)	100, 187
BsuRI	GGCC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	317
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	2 cut(s)	102, 189
DpnII	GATC	2 cut(s)	100, 187
DraI	TTTAAA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	202
FaiI	YATR	1 cut(s)	142
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	8 cut(s)	68, 138, 163, 351, 384, 393, 396, 399
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	8 cut(s)	68, 138, 163, 351, 384, 393, 396, 399
GluI	GCNGC	8 cut(s)	68, 138, 163, 351, 384, 393, 396, 399
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	311
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	2 cut(s)	278, 481
Hpy188III	TCNNGA	3 cut(s)	31, 104, 294
HpyAV	CCTTC	3 cut(s)	121, 261, 291
HpyCH4V	TGCA	4 cut(s)	70, 140, 344, 353
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 389, 392, 398, 404
HpyF3I	CTNAG	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	100, 187
LmnI	GCTCC	3 cut(s)	33, 212, 477
LpnPI	CCDG	8 cut(s)	16, 117, 220, 279, 309, 333, 342, 423
Lsp1109I	GCAGC	6 cut(s)	54, 124, 337, 370, 379, 382
MalI	GATC	2 cut(s)	102, 189
MboI	GATC	2 cut(s)	100, 187
MboII	GAAGA	2 cut(s)	197, 433
MflI	RGATCY	2 cut(s)	100, 187
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	285
MnlI	CCTC	9 cut(s)	121, 214, 262, 301, 322, 323, 397, 409, 467
MseI	TTAA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	323, 392
Mva1269I	GAATGC	1 cut(s)	60
MwoI	GCNNNNNNNGC	5 cut(s)	350, 389, 392, 398, 404
NdeII	GATC	2 cut(s)	100, 187
NlaIV	GGNNCC	2 cut(s)	208, 217
NmeAIII	GCCGAG	1 cut(s)	244
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	8 cut(s)	69, 139, 164, 352, 385, 394, 397, 400
PspN4I	GGNNCC	2 cut(s)	208, 217
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	100, 187
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	8 cut(s)	68, 138, 163, 351, 384, 393, 396, 399
Sau3AI	GATC	2 cut(s)	100, 187
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	7 cut(s)	38, 132, 204, 285, 325, 334, 482
SmlI	CTYRAG	2 cut(s)	114, 191
SmoI	CTYRAG	2 cut(s)	114, 191
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	6 cut(s)	58, 96, 162, 180, 390, 398
StyI	CCWWGG	1 cut(s)	202
TasI	AATT	1 cut(s)	285
TauI	GCSGC	2 cut(s)	165, 401
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	6 cut(s)	67, 137, 350, 383, 392, 395
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	2 cut(s)	199, 304
Van91I	CCANNNNNTGG	1 cut(s)	326
XagI	CCTNNNNNAGG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.