Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Forward (+)

14011557 .. 14013651

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G114700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGTTGTTGCAGCATACTTGTTGGCTGTGTTGGGGGGCAATACCACCCCTTCTGCCGAAGATCTCAAGGACATCCTTGGCTCTGTTGGAGCTGAGACTGATGATGATAGGATTCAGCTTCTTCTTTCGGAAGTGAAGGGTAAGGACATTACAGAGCTTATTGCTTCTGGAAGGGAGAAGTTGGCCTCTGTACCATCTGGTGGTGGTGCTGTTGCAGTGGCTGCACCTGGTGCTGGTGCTGGTGCCGCTGCTCCTGCTGCAGCTGAGCCAAAGAAAGAAGAGAAGGTTGAGGAGAAAGAGGATACCGATGATGATATGGGCTTCAGTCTCTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

114

Amino Acids

11.41

Weight (kDa)

4.3

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	203, 236
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	95, 121, 160, 266
AluI	AGCT	4 cut(s)	95, 121, 160, 266
Alw26I	GTCTC	2 cut(s)	92, 335
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	5 cut(s)	14, 224, 251, 260, 263
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	5 cut(s)	26, 211, 238, 247, 275
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	92, 335
BfaI	CTAG	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	298
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	6 cut(s)	15, 225, 249, 252, 261, 264
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	6 cut(s)	16, 226, 250, 253, 262, 265
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	231
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 236
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	203, 236
BseMII	CTCAG	2 cut(s)	87, 258
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	5 cut(s)	26, 211, 238, 247, 275
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	203, 236
BsmAI	GTCTC	2 cut(s)	92, 335
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	64
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	88, 259
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	2 cut(s)	224, 233
BstDEI	CTNAG	2 cut(s)	96, 267
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	92, 335
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 233, 248, 257, 260
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	5 cut(s)	26, 211, 238, 247, 275
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	194
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	2 cut(s)	96, 267
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraIII	CACNNNGTG	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaiI	YATR	2 cut(s)	19, 320
Fnu4HI	GCNGC	6 cut(s)	15, 225, 249, 252, 261, 264
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	6 cut(s)	15, 225, 249, 252, 261, 264
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	6 cut(s)	15, 225, 249, 252, 261, 264
HaeIII	GGCC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	4 cut(s)	63, 133, 168, 280
HpyCH4V	TGCA	4 cut(s)	14, 218, 227, 263
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 233, 248, 257, 260
HpyF3I	CTNAG	2 cut(s)	96, 267
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	92, 259
LpnPI	CCDG	7 cut(s)	156, 186, 216, 222, 228, 243, 270
Lsp1109I	GCAGC	5 cut(s)	26, 211, 238, 247, 275
MabI	ACCWGGT	1 cut(s)	229
MaeI	CTAG	1 cut(s)	340
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	74, 116, 293
MflI	RGATCY	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	199, 286, 295
MspA1I	CMGCKG	2 cut(s)	251, 266
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	5 cut(s)	224, 233, 248, 257, 260
NdeII	GATC	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	16, 226, 250, 253, 262, 265
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	6 cut(s)	15, 225, 249, 252, 261, 264
Sau3AI	GATC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	7 cut(s)	9, 97, 123, 162, 232, 268, 291
SexAI	ACCWGGT	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	79
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	5 cut(s)	14, 224, 251, 260, 263
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	203
XspI	CTAG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.