Rw1G014200

Belongs to the eukaryotic ribosomal protein P1 P2 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
31728439 .. 31729295
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014200.1

Sequence Viewer

Length: 258 bp
ATGAAGGTGATCGCTGCTTATTTGCTCGCTGTGTTGGGGGGCAAGACCAGAACCGAAGACATCAAGAGTATCCTTGGCGCCGCAGATGATGACAGGCTTCAGTTTCTTCTCAAGGAAGTTCAGGGTAAGGACATAACAGAGCATATTGCCTCTGGAAGGGAGAAGTTGGCTTGTATTGAGATTATAGATATATTGCTTAATTTCTCCAGATACAGGATGTCATCTCGTTTAATTTTAAGTCCTTTTATTAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.58

Weight (kDa)

8.89

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AciI CCGC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 156, 213
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 63
BciVI GTATCC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 81
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 2 cut(s) 15, 81
BlsI GCNGC 2 cut(s) 16, 82
BmiI GGNNCC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 213
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 156, 213
BshNI GGYRCC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 156, 213
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 80
CviJI RGCY 2 cut(s) 97, 170
CviKI_1 RGCY 2 cut(s) 97, 170
DinI GGCGCC 1 cut(s) 79
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 73
FaiI YATR 4 cut(s) 134, 144, 185, 191
Fnu4HI GCNGC 2 cut(s) 15, 81
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 15, 81
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 15, 81
GsuI CTGGAG 1 cut(s) 190
HaeII RGCGCY 1 cut(s) 81
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 78
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 3 cut(s) 64, 153, 207
HpyAV CCTTC 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 78
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 61, 79, 107, 138, 199, 220
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 68, 98
MluCI AATT 2 cut(s) 199, 231
Mly113I GGCGCC 1 cut(s) 78
MnlI CCTC 1 cut(s) 160
MseI TTAA 3 cut(s) 198, 230, 236
NarI GGCGCC 1 cut(s) 78
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 16, 82
PluTI GGCGCC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 79
SaqAI TTAA 3 cut(s) 198, 230, 236
SatI GCNGC 2 cut(s) 15, 81
Sau3AI GATC 1 cut(s) 9
SetI ASST 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 199, 231
SsiI CCGC 1 cut(s) 81
SspDI GGCGCC 1 cut(s) 77
StyI CCWWGG 1 cut(s) 73
TasI AATT 2 cut(s) 199, 231
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 198, 230, 236
Tru9I TTAA 3 cut(s) 198, 230, 236
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.