Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001160

Physical Location & Seq

Genomic Coordinates Forward (+)

9254844 .. 9256917

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGTGGTCGCTGCATATTTGCTCGCTGTTTTGGGAGGCAAGACCAGCCCCTCAGCTGCTGATTTGAAGGACATTCTCGGATCAGTTGGAGCTGAGGCCGATGGTGACAGGATTGAGTTGCTGTTGTCTGAAGTCAAGGGCAAAGATATTACAGAAGTAATTGCTTCCGGAAGGGAGAAGTTGGCATCTGTTCCATCTGGTGGTGGTGCAGTTGCTTATTCAGCACCTGCAGCTGATGCTGGTGCTGCAGCTCCTGCCGCTGCTGAGCAGAAGAAGGAAGAGAAGGTCGAAGAGAAGGAAGACACAGATGATGATATGGGATTCAGCCTTTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

114

Amino Acids

11.44

Weight (kDa)

4.38

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27710 AT2G27710 AT2G27710 AT2G27710 AT2G27720 AT2G27720 AT2G27720 AT2G27720 AT3G44590 AT3G44590
fragaria_vesca	FvH4_6g18210 FvH4_6g25270
malus_domestica	MD03G1138800.v1.1 MD09G1183400.v1.1 MD09G1269400.v1.1 MD10G1207100.v1.1 MD11G1160300.v1.1 MD12G1022000.v1.1 MD14G1018800.v1.1
prunus_persica	Prupe.6G123800_v2.0.a1 Prupe.7G114700_v2.0.a1
pyrus_communis	pycom15g39030
rosa_chinensis	RchiOBHm_Chr3g0472541 RchiOBHm_Chr4g0405631 RchiOBHm_Chr5g0002791 RchiOBHm_Chr5g0043421 RchiOBHm_Chr6g0283321
rosa_laevigata	RLG00000002104 RLG00000024071 RLG00000031060 RLG00000034186
rosa_multiflora	Rmu_sc0001200.1_g000055 Rmu_sc0003510.1_g000027 Rmu_sc0011581.1_g000006 Rmu_sc0013603.1_g000017 Rmu_sc0041617.1_g000001 Rmu_ssc0000029.1_g000007 Rmu_ssc0000067.1_g000066 Rmu_ssc0000341.1_g000007
rosa_roxburghii	Rroxscaffold_1G00037460 Rroxscaffold_1G00073050 Rroxscaffold_6G00408850 Rroxscaffold_6G00416420
rosa_rugosa	Rorug03G0126400 Rorug03G0126500 Rorug04G0399600 Rorug05G0205800 Rorug05G0205900 Rorug05G0206500
rosa_samantha	Rh2BG054600 Rh5BG298200
rosa_wichuraiana	Rw1G008940 Rw1G014200 Rw2G048840 Rw3G016340 Rw5G002090 Rw5G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	4 cut(s)	59, 95, 236, 254
AluI	AGCT	4 cut(s)	59, 95, 236, 254
AlwI	GGATC	1 cut(s)	91
AlwNI	CAGNNNCTG	3 cut(s)	62, 230, 257
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	6 cut(s)	14, 59, 233, 248, 251, 263
AsuHPI	GGTGA	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	309
BbvCI	CCTCAGC	2 cut(s)	55, 96
BbvI	GCAGC	5 cut(s)	46, 235, 245, 250, 263
BccI	CCATC	2 cut(s)	98, 205
BfmI	CTRYAG	2 cut(s)	231, 249
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	7 cut(s)	15, 60, 234, 249, 252, 261, 264
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	7 cut(s)	16, 61, 235, 250, 253, 262, 265
BmsI	GCATC	2 cut(s)	197, 229
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	2 cut(s)	55, 96
Bpu1102I	GCTNAGC	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseAI	TCCGGA	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	69, 87, 258
BseXI	GCAGC	5 cut(s)	46, 235, 245, 250, 263
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	83
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	3 cut(s)	68, 88, 259
BspEI	TCCGGA	1 cut(s)	170
BspMAI	CTGCAG	2 cut(s)	235, 253
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	91
BssMI	GATC	1 cut(s)	83
Bst6I	CTCTTC	2 cut(s)	276, 288
BstAPI	GCANNNNNTGC	2 cut(s)	239, 257
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	55, 96, 267
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 224, 233, 239, 248, 257, 260
BstSFI	CTRYAG	2 cut(s)	231, 249
BstV1I	GCAGC	5 cut(s)	46, 235, 245, 250, 263
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	3 cut(s)	62, 230, 257
CviJI	RGCY	7 cut(s)	51, 59, 95, 101, 236, 254, 330
CviKI_1	RGCY	7 cut(s)	51, 59, 95, 101, 236, 254, 330
DdeI	CTNAG	3 cut(s)	55, 96, 267
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	276, 288
EarI	CTCTTC	2 cut(s)	276, 288
Eco57I	CTGAAG	1 cut(s)	153
FaiI	YATR	2 cut(s)	19, 320
Fnu4HI	GCNGC	7 cut(s)	15, 60, 234, 249, 252, 261, 264
Fsp4HI	GCNGC	7 cut(s)	15, 60, 234, 249, 252, 261, 264
GluI	GCNGC	7 cut(s)	15, 60, 234, 249, 252, 261, 264
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	171
HinfI	GANTC	1 cut(s)	324
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	83, 133
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	5 cut(s)	64, 168, 271, 280, 292
HpyCH4V	TGCA	4 cut(s)	17, 212, 233, 251
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 224, 233, 239, 248, 257, 260
HpyF3I	CTNAG	3 cut(s)	55, 96, 267
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	92, 259
LpnPI	CCDG	7 cut(s)	61, 97, 184, 186, 228, 243, 270
Lsp1109I	GCAGC	5 cut(s)	46, 235, 245, 250, 263
LweI	GCATC	2 cut(s)	197, 229
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	4 cut(s)	286, 293, 305, 314
MluCI	AATT	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	32, 64, 91
MroI	TCCGGA	1 cut(s)	170
MspA1I	CMGCKG	3 cut(s)	59, 236, 263
MspI	CCGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	7 cut(s)	48, 224, 233, 239, 248, 257, 260
NdeII	GATC	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	324
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	7 cut(s)	16, 61, 235, 250, 253, 262, 265
PstI	CTGCAG	2 cut(s)	235, 253
PstNI	CAGNNNCTG	3 cut(s)	62, 230, 257
PvuII	CAGCTG	2 cut(s)	59, 236
SatI	GCNGC	7 cut(s)	15, 60, 234, 249, 252, 261, 264
Sau3AI	GATC	1 cut(s)	83
SetI	ASST	7 cut(s)	9, 61, 97, 232, 238, 256, 291
SfaNI	GCATC	2 cut(s)	197, 229
SfcI	CTRYAG	2 cut(s)	231, 249
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	261
TaqI	TCGA	2 cut(s)	291, 336
TasI	AATT	1 cut(s)	162
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	6 cut(s)	14, 59, 233, 248, 251, 263
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.