RchiOBHm_Chr5g0043421

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001160
Physical Location & Seq
Reverse (-)
38386564 .. 38388760
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32173

Sequence Viewer

Length: 345 bp
ATGAAGGTTGTTGCTGCATATCTTCTGGCTGTTTTGGGAGGGAACACCAGCCCCTCAGCTGATGATGTGAAGAATATTCTTAGCTCAGTTGGAGCTGAAGCTGATGGTGATAGGATTGAGTTGCTATTGTCCCAAGTAAAGGGCAAAGATATTACTGAGCTAATTGCGTCTGGAAGGGAGAAGTTGGCATCTGTTCCCTCTGGTGGTGGTGCAGTTGGTGTTGCCGCACCTGCAGCTGGTGGTGGTGGTGGAGCAGCTACTGCTGCTGCTGAGCAGAAAAAGGAGGAGAAGGTAGAAGAGAAGGAAGAGTCTGATGATGATATGGGTTTTAGCCTTTTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

114

Amino Acids

11.38

Weight (kDa)

4.42

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 113 2.1e-26 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AciI CCGC 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 117
AfiI CCNNNNNNNGG 3 cut(s) 139, 203, 236
AluBI AGCT 7 cut(s) 59, 84, 95, 101, 160, 236, 257
AluI AGCT 7 cut(s) 59, 84, 95, 101, 160, 236, 257
AlwNI CAGNNNCTG 1 cut(s) 260
ApeKI GCWGC 5 cut(s) 14, 233, 254, 263, 266
AsuHPI GGTGA 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 55
BbvI GCAGC 4 cut(s) 245, 250, 253, 266
BccI CCATC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 6 cut(s) 15, 225, 234, 255, 264, 267
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 6 cut(s) 16, 226, 235, 256, 265, 268
BmsI GCATC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 270
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 203, 236
BseLI CCNNNNNNNGG 3 cut(s) 139, 203, 236
BseMII CTCAG 4 cut(s) 69, 99, 147, 261
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 4 cut(s) 245, 250, 253, 266
BsgI GTGCAG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 3 cut(s) 139, 203, 236
BsmFI GGGAC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 4 cut(s) 68, 98, 148, 262
BspMAI CTGCAG 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 238
Bst6I CTCTTC 2 cut(s) 291, 300
BstAPI GCANNNNNTGC 1 cut(s) 260
BstDEI CTNAG 5 cut(s) 55, 80, 85, 156, 270
BstMWI GCNNNNNNNGC 4 cut(s) 230, 233, 260, 263
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 245, 250, 253, 266
BveI ACCTGC 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 260
CseI GACGC 1 cut(s) 156
DdeI CTNAG 5 cut(s) 55, 80, 85, 156, 270
Eam1104I CTCTTC 2 cut(s) 291, 300
EarI CTCTTC 2 cut(s) 291, 300
Eco57I CTGAAG 1 cut(s) 117
FaiI YATR 2 cut(s) 19, 323
FaqI GGGAC 1 cut(s) 115
Fnu4HI GCNGC 6 cut(s) 15, 225, 234, 255, 264, 267
Fsp4HI GCNGC 6 cut(s) 15, 225, 234, 255, 264, 267
GluI GCNGC 6 cut(s) 15, 225, 234, 255, 264, 267
HgaI GACGC 1 cut(s) 156
HinfI GANTC 1 cut(s) 308
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 168, 283, 295
HpyCH4V TGCA 3 cut(s) 17, 212, 233
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 233, 260, 263
HpyF3I CTNAG 5 cut(s) 55, 80, 85, 156, 270
LmnI GCTCC 2 cut(s) 92, 251
LpnPI CCDG 6 cut(s) 11, 61, 156, 186, 222, 243
Lsp1109I GCAGC 4 cut(s) 245, 250, 253, 266
LweI GCATC 1 cut(s) 197
MboII GAAGA 4 cut(s) 14, 82, 308, 317
MluCI AATT 1 cut(s) 162
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 32, 64, 208, 277
MspA1I CMGCKG 2 cut(s) 59, 236
MwoI GCNNNNNNNGC 4 cut(s) 230, 233, 260, 263
PaqCI CACCTGC 1 cut(s) 238
PkrI GCNGC 6 cut(s) 16, 226, 235, 256, 265, 268
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 260
PvuII CAGCTG 2 cut(s) 59, 236
SatI GCNGC 6 cut(s) 15, 225, 234, 255, 264, 267
SchI GAGTC 1 cut(s) 317
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 231
SgeI CNNG 7 cut(s) 38, 60, 146, 183, 213, 242, 249
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 225
SspI AATATT 1 cut(s) 76
TaqI TCGA 1 cut(s) 339
TasI AATT 1 cut(s) 162
TauI GCSGC 1 cut(s) 227
TseI GCWGC 5 cut(s) 14, 233, 254, 263, 266
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.