AT2G39200

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
16356041 .. 16359943
3903 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39200.1

Sequence Viewer

Length: 1731 bp
ATGGCAATAAAAGAGCGATCACTAGAGGAAACACCAACATGGGCTGTTGCTGTAGTTTGCTTCGTTCTCCTTTTCATTTCCATCATGATCGAATACTTCTTGCACTTTATTGGTCACTGGTTTAAGAAGAAGCACAAGAAAGCTTTATCTGAAGCTCTTGAAAAGGTTAAAGCAGAACTGATGCTTCTGGGATTCATATCGCTTCTATTGGTTGTATTGCAAACACCAGTCTCCGAGATTTGCATTCCAAGAAATATTGCTGCGACTTGGCATCCTTGTAGCAACCATCAAGAAATCGCCAAATATGGTAAAGATTATATCGACGATGGCCGCAAAATTCTTGAAGATTTTGACTCCAACGACTTTTACAGTCCTCGCCGAAATTTAGCCACCAAGGGTTATGACAAATGCGCAGAAAAGGGGAAAGTAGCATTAGTATCTGCCTATGGTATCCACCAGCTGCATATATTCATCTTTGTGCTCGCTGTTTTTCATGTTCTCTACTGCATTATAACCTATGCTTTAGGAAAGACCAAGATGAAGAAATGGAAGTCATGGGAGAGAGAGACCAAAACAATTGAGTACCAATATGCCAATGATCCAGAGAGGTTCAGATTTGCAAGAGATACATCGTTCGGACGTAGACATCTGAATATATGGAGCAAGTCTACCTTTACCCTCTGGATTACATGTTTCTTCAGACAGTTCTTTGGATCAGTGACAAAAGTAGATTATCTTACACTAAGACATGGCTTTATTATGGCACATTTGCCAGCAGGAAGTGCCGCTCGTTTCGATTTCCAAAAATACATTGAAAGATCTTTGGAACAAGATTTCACGGTGGTTGTCGGTATAAGCCCACTGATATGGTGCATTGCTGTCTTATTCATATTGACCAATACACATGGATGGGACTCATATCTTTGGCTGCCCTTCCTTCCCTTGATTGTGATATTGATAGTAGGAGCAAAACTTCAAATGATAATATCGAAATTAGGATTAAGGATTCAAGAAAAAGGAGATGTGGTTAAAGGAGCTCCTGTGGTTGAACCGGGCGATGATCTCTTTTGGTTTGGTCGTCCTCGTTTCATTCTCTTCCTCATTCACTTGGTTCTTTTCACGAATGCATTTCAACTGGCTTTCTTCGTTTGGAGCACTTACGAATTCACACTCAAAAACTGCTTCCACCACAAAACAGAAGACATTGCAATTAGGATCACCATGGGGGTATTAATACAAGTTCTATGCAGCTACATCACTCTACCTCTCTATGCTCTTGTTACTCAGATGGGAACATCAATGAGGCCGACAATATTCAACGACAGGGTAGCCAATGCATTGAAGAAATGGCACCACACAGCCAAGAAACAGACGAAACATGGACACTCAGGATCTAACACACCTCACTCGAGCCGTCCTACTACGCCAACACATGGCATGTCACCGGTGCATCTCCTCCACAACTACAATAACCGCAGCCTCGACCAACAAACCAGCTTCACTGCTTCTCCTTCTCCTCCTAGATTCTCTGATTATAGCGGCCAAGGCCATGGCCATCAGCATTTCTTCGACCCTGAATCTCAGAATCACTCTTACCAACGTGAGATCACAGATTCTGAATTCAGCAATAGTCATCATCCCCAAGTTGACATGGCAAGTCCTGTTAGAGAAGAGAAGGAGATTGTTGAGCATGTCAAGGTTGATTTGTCTGAGTTTACGTTCAAGAAGTGA

Protein Analysis

576

Amino Acids

66.55

Weight (kDa)

9.07

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 5 - 489 5.4e-245 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
Acc16I TGCGCA 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 1350
AccB7I CCANNNNNTGG 1 cut(s) 1433
AccBSI CCGCTC 1 cut(s) 788
AccI GTMKAC 2 cut(s) 643, 668
AciI CCGC 4 cut(s) 331, 786, 1474, 1539
AclWI GGATC 4 cut(s) 593, 721, 1223, 1399
AcoI YGGCCR 3 cut(s) 328, 1540, 1552
AcsI RAATTY 4 cut(s) 336, 382, 1163, 1619
AcuI CTGAAG 2 cut(s) 171, 682
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 1 cut(s) 1433
AflIII ACRYGT 1 cut(s) 689
AgeI ACCGGT 1 cut(s) 1444
AluBI AGCT 6 cut(s) 143, 155, 460, 1037, 1251, 1497
AluI AGCT 6 cut(s) 143, 155, 460, 1037, 1251, 1497
Alw21I GWGCWC 3 cut(s) 483, 1039, 1157
Alw26I GTCTC 2 cut(s) 235, 560
AlwI GGATC 4 cut(s) 593, 721, 1223, 1399
AlwNI CAGNNNCTG 1 cut(s) 1616
Ama87I CYCGRG 1 cut(s) 1408
AoxI GGCC 5 cut(s) 328, 1304, 1540, 1546, 1552
ApeKI GCWGC 5 cut(s) 260, 460, 928, 1248, 1476
ApoI RAATTY 4 cut(s) 336, 382, 1163, 1619
AseI ATTAAT 1 cut(s) 1232
AsiGI ACCGGT 1 cut(s) 1444
AspLEI GCGC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 1053
AsuHPI GGTGA 2 cut(s) 1210, 1434
AvaI CYCGRG 1 cut(s) 1408
BalI TGGCCA 1 cut(s) 1554
BanI GGYRCC 1 cut(s) 1350
BanII GRGCYC 1 cut(s) 1039
BbsI GAAGAC 1 cut(s) 1206
Bbv12I GWGCWC 3 cut(s) 483, 1039, 1157
BbvI GCAGC 5 cut(s) 247, 447, 915, 1260, 1488
BccI CCATC 6 cut(s) 89, 294, 320, 903, 1282, 1563
BceAI ACGGC 1 cut(s) 1398
BciVI GTATCC 1 cut(s) 461
BcnI CCSGG 1 cut(s) 1053
BcoDI GTCTC 2 cut(s) 235, 560
BfaI CTAG 2 cut(s) 23, 1521
BfmI CTRYAG 1 cut(s) 51
BfuI GTATCC 1 cut(s) 461
BglII AGATCT 1 cut(s) 818
BisI GCNGC 8 cut(s) 261, 331, 461, 786, 929, 1249, 1477, 1540
BlsI GCNGC 8 cut(s) 262, 332, 462, 787, 930, 1250, 1478, 1541
Bme1390I CCNGG 1 cut(s) 1053
BmeT110I CYCGRG 1 cut(s) 1408
BmiI GGNNCC 1 cut(s) 1352
BmrFI CCNGG 1 cut(s) 1053
BmsI GCATC 3 cut(s) 171, 280, 1459
BpiI GAAGAC 1 cut(s) 1206
BpuMI CCSGG 1 cut(s) 1053
BsaBI GATNNNNATC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 4 cut(s) 393, 1221, 1543, 1549
BsaWI WCCGGW 1 cut(s) 1444
BsaXI ACNNNNNCTCC 6 cut(s) 1011, 1026, 1041, 1056, 1492, 1522
Bsc4I CCNNNNNNNGG 1 cut(s) 1433
Bse118I RCCGGY 1 cut(s) 1444
Bse1I ACTGG 3 cut(s) 122, 227, 1140
Bse3DI GCAATG 2 cut(s) 873, 1203
Bse8I GATNNNNATC 1 cut(s) 196
BseDI CCNNGG 4 cut(s) 393, 1221, 1543, 1549
BseGI GGATG 3 cut(s) 271, 914, 1636
BseJI GATNNNNATC 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 1433
BseMI GCAATG 2 cut(s) 873, 1203
BseMII CTCAG 4 cut(s) 1298, 1401, 1595, 1701
BseNI ACTGG 3 cut(s) 122, 227, 1140
BseRI GAGGAG 2 cut(s) 1445, 1506
BseXI GCAGC 5 cut(s) 247, 447, 915, 1260, 1488
BshFI GGCC 5 cut(s) 330, 1306, 1542, 1548, 1554
BshNI GGYRCC 1 cut(s) 1350
BshTI ACCGGT 1 cut(s) 1444
BsiHKAI GWGCWC 3 cut(s) 483, 1039, 1157
BsiHKCI CYCGRG 1 cut(s) 1408
BsiSI CCGG 2 cut(s) 1052, 1445
BslFI GGGAC 1 cut(s) 926
BslI CCNNNNNNNGG 1 cut(s) 1433
BsmAI GTCTC 2 cut(s) 235, 560
BsmFI GGGAC 1 cut(s) 926
BsmI GAATGC 2 cut(s) 243, 1129
BsnI GGCC 5 cut(s) 330, 1306, 1542, 1548, 1554
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 1 cut(s) 1408
Bsp1286I GDGCHC 3 cut(s) 483, 1039, 1157
Bsp143I GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
Bsp19I CCATGG 2 cut(s) 1221, 1549
BspACI CCGC 4 cut(s) 331, 786, 1474, 1539
BspANI GGCC 5 cut(s) 330, 1306, 1542, 1548, 1554
BspCNI CTCAG 4 cut(s) 1297, 1400, 1594, 1702
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 1352
BspPI GGATC 4 cut(s) 593, 721, 1223, 1399
BspT107I GGYRCC 1 cut(s) 1350
BspTNI GGTCTC 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 788
BsrDI GCAATG 2 cut(s) 873, 1203
BsrFI RCCGGY 1 cut(s) 1444
BsrI ACTGG 3 cut(s) 122, 227, 1140
BssAI RCCGGY 1 cut(s) 1444
BssECI CCNNGG 4 cut(s) 393, 1221, 1543, 1549
BssMI GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
BssT1I CCWWGG 4 cut(s) 393, 1221, 1543, 1549
Bst4CI ACNGT 3 cut(s) 371, 705, 841
Bst6I CTCTTC 2 cut(s) 1100, 1665
BstAPI GCANNNNNTGC 1 cut(s) 782
BstC8I GCNNGC 2 cut(s) 483, 774
BstDEI CTNAG 5 cut(s) 743, 1284, 1387, 1581, 1710
BstDSI CCRYGG 2 cut(s) 1221, 1549
BstF5I GGATG 3 cut(s) 271, 914, 1636
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 9 cut(s) 20, 90, 601, 716, 821, 1063, 1218, 1394, 1608
BstMAI GTCTC 2 cut(s) 235, 560
BstMBI GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
BstMWI GCNNNNNNNGC 2 cut(s) 782, 1545
BstNSI RCATGY 3 cut(s) 693, 1441, 1694
BstSCI CCNGG 1 cut(s) 1051
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 5 cut(s) 247, 447, 915, 1260, 1488
BstV2I GAAGAC 1 cut(s) 1206
BstX2I RGATCY 2 cut(s) 818, 1391
BstXI CCANNNNNNTGG 2 cut(s) 867, 1550
BstYI RGATCY 2 cut(s) 818, 1391
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 5 cut(s) 330, 1306, 1542, 1548, 1554
BtgI CCRYGG 2 cut(s) 1221, 1549
BtgZI GCGATG 1 cut(s) 1071
BtsCI GGATG 3 cut(s) 271, 914, 1636
BtsI GCAGTG 1 cut(s) 1500
BtsIMutI CAGTG 4 cut(s) 115, 723, 860, 1500
Cac8I GCNNGC 2 cut(s) 483, 774
CaiI CAGNNNCTG 1 cut(s) 1616
CciI TCATGA 1 cut(s) 84
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 1444
Csp6I GTAC 1 cut(s) 583
CspAI ACCGGT 1 cut(s) 1444
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 5 cut(s) 743, 1284, 1387, 1581, 1710
DpnI GATC 9 cut(s) 19, 89, 600, 715, 820, 1062, 1217, 1393, 1607
DpnII GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
EaeI YGGCCR 3 cut(s) 328, 1540, 1552
Eam1104I CTCTTC 2 cut(s) 1100, 1665
EarI CTCTTC 2 cut(s) 1100, 1665
Ecl136II GAGCTC 1 cut(s) 1037
Eco130I CCWWGG 4 cut(s) 393, 1221, 1543, 1549
Eco24I GRGCYC 1 cut(s) 1039
Eco31I GGTCTC 1 cut(s) 560
Eco53kI GAGCTC 1 cut(s) 1037
Eco57I CTGAAG 2 cut(s) 171, 682
Eco88I CYCGRG 1 cut(s) 1408
EcoICRI GAGCTC 1 cut(s) 1037
EcoRI GAATTC 2 cut(s) 1163, 1619
EcoT14I CCWWGG 4 cut(s) 393, 1221, 1543, 1549
EcoT22I ATGCAT 2 cut(s) 1129, 1339
EcoT38I GRGCYC 1 cut(s) 1039
ErhI CCWWGG 4 cut(s) 393, 1221, 1543, 1549
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FaqI GGGAC 1 cut(s) 926
FblI GTMKAC 2 cut(s) 643, 668
Fnu4HI GCNGC 8 cut(s) 261, 331, 461, 786, 929, 1249, 1477, 1540
FokI GGATG 3 cut(s) 258, 921, 1623
FriOI GRGCYC 1 cut(s) 1039
Fsp4HI GCNGC 8 cut(s) 261, 331, 461, 786, 929, 1249, 1477, 1540
FspBI CTAG 2 cut(s) 23, 1521
FspI TGCGCA 1 cut(s) 412
GlaI GCGC 1 cut(s) 412
GluI GCNGC 8 cut(s) 261, 331, 461, 786, 929, 1249, 1477, 1540
HaeIII GGCC 5 cut(s) 330, 1306, 1542, 1548, 1554
HapII CCGG 2 cut(s) 1052, 1445
HhaI GCGC 1 cut(s) 413
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HincII GTYRAC 1 cut(s) 1648
HindII GTYRAC 1 cut(s) 1648
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 8 cut(s) 192, 353, 914, 1006, 1524, 1577, 1585, 1613
HpaII CCGG 2 cut(s) 1052, 1445
HphI GGTGA 2 cut(s) 1210, 1434
Hpy166II GTNNAC 4 cut(s) 644, 669, 1648, 1716
Hpy8I GTNNAC 4 cut(s) 644, 669, 1648, 1716
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 4 cut(s) 943, 947, 1521, 1669
HpyCH4III ACNGT 3 cut(s) 371, 705, 841
HpyCH4IV ACGT 3 cut(s) 640, 1600, 1718
HpyF10VI GCNNNNNNNGC 2 cut(s) 782, 1545
HpyF3I CTNAG 5 cut(s) 743, 1284, 1387, 1581, 1710
HpySE526I ACGT 3 cut(s) 640, 1600, 1718
HspAI GCGC 1 cut(s) 411
Kzo9I GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
LmnI GCTCC 5 cut(s) 660, 965, 1034, 1042, 1152
Lsp1109I GCAGC 5 cut(s) 247, 447, 915, 1260, 1488
LweI GCATC 3 cut(s) 171, 280, 1459
MaeI CTAG 2 cut(s) 23, 1521
MaeII ACGT 3 cut(s) 640, 1600, 1718
MaeIII GTNAC 4 cut(s) 113, 718, 1279, 1440
MalI GATC 9 cut(s) 19, 89, 600, 715, 820, 1062, 1217, 1393, 1607
MbiI CCGCTC 1 cut(s) 788
MboI GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 2 cut(s) 818, 1391
MhlI GDGCHC 3 cut(s) 483, 1039, 1157
MlsI TGGCCA 1 cut(s) 1554
MluCI AATT 7 cut(s) 336, 382, 576, 992, 1163, 1209, 1619
MluNI TGGCCA 1 cut(s) 1554
MlyI GAGTC 2 cut(s) 347, 908
MmeI TCCRAC 1 cut(s) 381
Mox20I TGGCCA 1 cut(s) 1554
Mph1103I ATGCAT 2 cut(s) 1129, 1339
MscI TGGCCA 1 cut(s) 1554
MseI TTAA 5 cut(s) 123, 168, 1001, 1029, 1232
MslI CAYNNNNRTG 4 cut(s) 37, 476, 865, 907
Msp20I TGGCCA 1 cut(s) 1554
MspA1I CMGCKG 1 cut(s) 460
MspI CCGG 2 cut(s) 1052, 1445
MspR9I CCNGG 1 cut(s) 1053
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 2 cut(s) 243, 1129
MwoI GCNNNNNNNGC 2 cut(s) 782, 1545
NciI CCSGG 1 cut(s) 1053
NcoI CCATGG 2 cut(s) 1221, 1549
NdeII GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
NlaIV GGNNCC 1 cut(s) 1352
NmuCI GTSAC 3 cut(s) 113, 718, 1440
NsbI TGCGCA 1 cut(s) 412
NsiI ATGCAT 2 cut(s) 1129, 1339
NspI RCATGY 3 cut(s) 693, 1441, 1694
PaeR7I CTCGAG 1 cut(s) 1408
PagI TCATGA 1 cut(s) 84
PciI ACATGT 1 cut(s) 689
PctI GAATGC 2 cut(s) 243, 1129
PfeI GAWTC 6 cut(s) 192, 1006, 1524, 1577, 1585, 1613
PflMI CCANNNNNTGG 1 cut(s) 1433
PinAI ACCGGT 1 cut(s) 1444
PkrI GCNGC 8 cut(s) 262, 332, 462, 787, 930, 1250, 1478, 1541
PleI GAGTC 2 cut(s) 347, 908
PpsI GAGTC 2 cut(s) 347, 908
PscI ACATGT 1 cut(s) 689
PshBI ATTAAT 1 cut(s) 1232
PsiI TTATAA 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 1039
PspN4I GGNNCC 1 cut(s) 1352
PspXI VCTCGAGB 1 cut(s) 1408
PstNI CAGNNNCTG 1 cut(s) 1616
PsuI RGATCY 2 cut(s) 818, 1391
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 4 cut(s) 37, 476, 865, 907
SacI GAGCTC 1 cut(s) 1039
SaqAI TTAA 5 cut(s) 123, 168, 1001, 1029, 1232
SatI GCNGC 8 cut(s) 261, 331, 461, 786, 929, 1249, 1477, 1540
Sau3AI GATC 9 cut(s) 17, 87, 598, 713, 818, 1060, 1215, 1391, 1605
SchI GAGTC 2 cut(s) 347, 908
ScrFI CCNGG 1 cut(s) 1053
SduI GDGCHC 3 cut(s) 483, 1039, 1157
SfaNI GCATC 3 cut(s) 171, 280, 1459
SfcI CTRYAG 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 1408
SgrAI CRCCGGYG 1 cut(s) 1444
SlaI CTCGAG 1 cut(s) 1408
SmiMI CAYNNNNRTG 4 cut(s) 37, 476, 865, 907
SmlI CTYRAG 1 cut(s) 1408
SmoI CTYRAG 1 cut(s) 1408
Sse9I AATT 7 cut(s) 336, 382, 576, 992, 1163, 1209, 1619
SsiI CCGC 4 cut(s) 331, 786, 1474, 1539
SspI AATATT 2 cut(s) 256, 1314
SspMI CTAG 2 cut(s) 23, 1521
SstI GAGCTC 1 cut(s) 1039
StyD4I CCNGG 1 cut(s) 1051
StyI CCWWGG 4 cut(s) 393, 1221, 1543, 1549
TaaI ACNGT 3 cut(s) 371, 705, 841
TaiI ACGT 3 cut(s) 643, 1603, 1721
TaqI TCGA 7 cut(s) 90, 321, 795, 989, 1409, 1482, 1569
TasI AATT 7 cut(s) 336, 382, 576, 992, 1163, 1209, 1619
TauI GCSGC 3 cut(s) 333, 788, 1542
TfiI GAWTC 6 cut(s) 192, 1006, 1524, 1577, 1585, 1613
Tru1I TTAA 5 cut(s) 123, 168, 1001, 1029, 1232
Tru9I TTAA 5 cut(s) 123, 168, 1001, 1029, 1232
TscAI CASTG 4 cut(s) 122, 723, 867, 1507
TseFI GTSAC 3 cut(s) 113, 718, 1440
TseI GCWGC 5 cut(s) 260, 460, 928, 1248, 1476
Tsp45I GTSAC 3 cut(s) 113, 718, 1440
TspDTI ATGAA 7 cut(s) 64, 184, 460, 482, 554, 877, 1078
TspRI CASTG 4 cut(s) 122, 723, 867, 1507
Van91I CCANNNNNTGG 1 cut(s) 1433
VspI ATTAAT 1 cut(s) 1232
XapI RAATTY 4 cut(s) 336, 382, 1163, 1619
XceI RCATGY 3 cut(s) 693, 1441, 1694
XhoI CTCGAG 1 cut(s) 1408
XmiI GTMKAC 2 cut(s) 643, 668
XspI CTAG 2 cut(s) 23, 1521
Zsp2I ATGCAT 2 cut(s) 1129, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.