Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Forward (+)

12597978 .. 12598613

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGACTTGAATATGAGCGTACATTAGAGAAAACACCAACATGGGCAGTTGCTGTGGTCTGTCTTGTGTTGCTTGTAATATCAATTTTCATTGAGCATGTCATAAACTTCATAGGAAAGTGGTTTAAAAGGAGACACAAGCGAGCTCTCTATGAAGCTCTTGAGAAGCTCAAATCAGAGCTTATGCTGTTGGGATTCCTATCCTTGATCCTAACAGTTCTACAAGATCCAATCGCTGGTATATGTATACCGAAGAGTGTTGGAGCCACTTGGCATCCTTGCAATGATGACACTTCAGATAGTAAGGCTAGAAAACTTCATGAATACTCAGATTCTGTCTTCAGTTTCCGGCGCAAATTAGCCACAAAAGGATATGATAAGTGCACGAAGAATGTAAGGGAAAGACAGTTCTTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

140

Amino Acids

16.13

Weight (kDa)

9.48

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	6 - 131	2.8e-47	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	202, 221
AcuI	CTGAAG	2 cut(s)	279, 325
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	11
AloI	GAACNNNNNNTCC	1 cut(s)	392
AluBI	AGCT	4 cut(s)	146, 158, 169, 181
AluI	AGCT	4 cut(s)	146, 158, 169, 181
Alw21I	GWGCWC	2 cut(s)	148, 386
Alw26I	GTCTC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	382
AlwI	GGATC	2 cut(s)	202, 221
AlwNI	CAGNNNCTG	2 cut(s)	53, 335
ApaLI	GTGCAC	1 cut(s)	382
ArsI	GACNNNNNNTTYG	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	148, 386
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	199
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	386
BsiHKAI	GWGCWC	2 cut(s)	148, 386
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	148, 386
Bsp143I	GATC	2 cut(s)	207, 226
BspCNI	CTCAG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	202, 221
BsrDI	GCAATG	1 cut(s)	289
BssMI	GATC	2 cut(s)	207, 226
BssNAI	GTATAC	1 cut(s)	248
Bst1107I	GTATAC	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	217, 408
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	2 cut(s)	210, 229
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	207, 226
BstNSI	RCATGY	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BstZ17I	GTATAC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	2 cut(s)	53, 335
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	42, 98, 320
CviJI	RGCY	7 cut(s)	146, 158, 169, 181, 266, 308, 362
CviKI_1	RGCY	7 cut(s)	146, 158, 169, 181, 266, 308, 362
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	2 cut(s)	209, 228
DpnII	GATC	2 cut(s)	207, 226
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	279, 325
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	3 cut(s)	45, 101, 323
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	41, 97, 319
FblI	GTMKAC	1 cut(s)	247
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	353
HapII	CCGG	1 cut(s)	349
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	45, 101, 323
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	195, 332
HpaII	CCGG	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	248, 384
Hpy188I	TCNGA	3 cut(s)	178, 298, 331
Hpy188III	TCNNGA	2 cut(s)	161, 320
Hpy8I	GTNNAC	2 cut(s)	248, 384
HpyCH4III	ACNGT	2 cut(s)	217, 408
HpyCH4V	TGCA	2 cut(s)	282, 384
HpyF3I	CTNAG	1 cut(s)	328
Hsp92II	CATG	3 cut(s)	45, 101, 323
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	207, 226
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	2 cut(s)	222, 362
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	309
MalI	GATC	2 cut(s)	209, 228
MboI	GATC	2 cut(s)	207, 226
MboII	GAAGA	3 cut(s)	265, 331, 400
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	148, 386
MluCI	AATT	2 cut(s)	84, 356
MmeI	TCCRAC	1 cut(s)	241
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	40
MspI	CCGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	207, 226
NlaIII	CATG	3 cut(s)	45, 101, 323
NlaIV	GGNNCC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	101
PagI	TCATGA	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	195, 332
PflMI	CCANNNNNTGG	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	265
PstNI	CAGNNNCTG	2 cut(s)	53, 335
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	207, 226
SduI	GDGCHC	2 cut(s)	148, 386
SetI	ASST	4 cut(s)	148, 160, 171, 183
SfaNI	GCATC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	84, 356
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	217, 408
TasI	AATT	2 cut(s)	84, 356
TfiI	GAWTC	2 cut(s)	195, 332
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspDTI	ATGAA	5 cut(s)	79, 100, 168, 308, 336
Van91I	CCANNNNNTGG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	382
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	247
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.