Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Reverse (-)

112203 .. 113316

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000548.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggctggaacacggaactgcaggggcagtatgcttgcgccaaggctgtgtggctgcagggacagtgcccaaggcagcgagggctgctgtgaggctgcaggggcagcgatacagagctgcaagcgcatgggcgcgcaggctacagagaaggagagagggacgcggggcgcgcgaggggttatcatacaagttttatgtagttatgtgactctgccgctctatgctttagtgacacagatgggttctagtatgaaacccactgtttttaatgagggagtggcagaagcagtgaaaagttggcatcacaaagcaaaaaagaaagtaaagcacagcctgcattcagagagaagcacaccattgtcaagtagacctggaactcctacacatggcatgtcaccagttcatctattgcacaatgtcaacaaccgcagtgatgaggatgacttgtttccacctccagaagcatcaatcgtcgtcgaaatggaacatttggacactgaaggttcacaaaagaacaatgttggaccgagtgaaagaggagcaattaggcaaactagtactgttagagaattaggccaaattcatgagcctccagctccaagcccctctcaggctcagcatgtagttaaaagtccgtcaagcttctcatttggtacatcaagaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

222

Amino Acids

23.84

Weight (kDa)

9.17

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	367
AccII	CGCG	4 cut(s)	134, 163, 170, 172
AciI	CCGC	3 cut(s)	163, 215, 427
AcsI	RAATTY	1 cut(s)	579
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	2 cut(s)	559, 655
AfiI	CCNNNNNNNGG	2 cut(s)	386, 610
AhlI	ACTAGT	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	117, 596, 642
AluI	AGCT	3 cut(s)	117, 596, 642
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	6 cut(s)	54, 75, 84, 95, 104, 117
ApoI	RAATTY	1 cut(s)	579
AspLEI	GCGC	6 cut(s)	40, 126, 134, 136, 170, 172
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	70
BbvI	GCAGC	6 cut(s)	41, 71, 82, 87, 104, 116
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	372
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	2 cut(s)	246, 555
BfmI	CTRYAG	4 cut(s)	19, 55, 96, 141
BisI	GCNGC	7 cut(s)	55, 76, 85, 96, 105, 118, 215
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	7 cut(s)	56, 77, 86, 97, 106, 119, 216
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	310, 473
BpmI	CTGGAG	2 cut(s)	441, 576
Bpu1102I	GCTNAGC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	41, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 610
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	41, 70
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	386, 610
BseMII	CTCAG	2 cut(s)	623, 629
BseNI	ACTGG	1 cut(s)	398
BsePI	GCGCGC	2 cut(s)	132, 168
BseRI	GAGGAG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	6 cut(s)	41, 71, 82, 87, 104, 116
Bsh1236I	CGCG	4 cut(s)	134, 163, 170, 172
BshFI	GGCC	1 cut(s)	576
BslFI	GGGAC	2 cut(s)	74, 172
BslI	CCNNNNNNNGG	2 cut(s)	386, 610
BsmFI	GGGAC	2 cut(s)	74, 172
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	3 cut(s)	163, 215, 427
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	2 cut(s)	622, 628
BspFNI	CGCG	4 cut(s)	134, 163, 170, 172
BspHI	TCATGA	1 cut(s)	583
BspMAI	CTGCAG	3 cut(s)	23, 59, 100
BsrBI	CCGCTC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	41, 70
BssHII	GCGCGC	2 cut(s)	132, 168
BssT1I	CCWWGG	2 cut(s)	41, 70
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	65, 262, 562
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	6 cut(s)	36, 122, 134, 138, 170, 335
BstDEI	CTNAG	2 cut(s)	609, 615
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	4 cut(s)	134, 163, 170, 172
BstHHI	GCGC	6 cut(s)	40, 126, 134, 136, 170, 172
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 84, 101, 104, 123, 169, 334
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	2 cut(s)	394, 623
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	4 cut(s)	19, 55, 96, 141
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	4 cut(s)	134, 163, 170, 172
BstV1I	GCAGC	6 cut(s)	41, 71, 82, 87, 104, 116
BsuRI	GGCC	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	2 cut(s)	294, 436
BtsIMutI	CAGTG	5 cut(s)	70, 258, 294, 436, 495
Cac8I	GCNNGC	6 cut(s)	36, 122, 134, 138, 170, 335
CciI	TCATGA	1 cut(s)	583
CfoI	GCGC	6 cut(s)	40, 126, 134, 136, 170, 172
Cfr13I	GGNCC	1 cut(s)	524
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	558, 654
CviAII	CATG	5 cut(s)	127, 386, 391, 584, 620
CviQI	GTAC	2 cut(s)	558, 654
DdeI	CTNAG	2 cut(s)	609, 615
Eco130I	CCWWGG	2 cut(s)	41, 70
Eco47I	GGWCC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	41, 70
ErhI	CCWWGG	2 cut(s)	41, 70
FaeI	CATG	5 cut(s)	130, 389, 394, 587, 623
FaqI	GGGAC	2 cut(s)	74, 172
FatI	CATG	5 cut(s)	126, 385, 390, 583, 619
FauI	CCCGC	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	7 cut(s)	55, 76, 85, 96, 105, 118, 215
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	7 cut(s)	55, 76, 85, 96, 105, 118, 215
FspBI	CTAG	2 cut(s)	246, 555
GlaI	GCGC	6 cut(s)	39, 125, 133, 135, 169, 171
GluI	GCNGC	7 cut(s)	55, 76, 85, 96, 105, 118, 215
GsuI	CTGGAG	2 cut(s)	441, 576
HaeIII	GGCC	1 cut(s)	576
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	6 cut(s)	40, 126, 134, 136, 170, 172
Hin1II	CATG	5 cut(s)	130, 389, 394, 587, 623
Hin6I	GCGC	6 cut(s)	38, 124, 132, 134, 168, 170
HinP1I	GCGC	6 cut(s)	38, 124, 132, 134, 168, 170
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	3 cut(s)	368, 421, 506
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	3 cut(s)	458, 584, 660
Hpy8I	GTNNAC	3 cut(s)	368, 421, 506
Hpy99I	CGWCG	2 cut(s)	476, 479
HpyAV	CCTTC	2 cut(s)	142, 494
HpyCH4III	ACNGT	3 cut(s)	65, 262, 562
HpyCH4V	TGCA	6 cut(s)	21, 57, 98, 120, 337, 412
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 84, 101, 104, 123, 169, 334
HpyF3I	CTNAG	2 cut(s)	609, 615
Hsp92II	CATG	5 cut(s)	130, 389, 394, 587, 623
HspAI	GCGC	6 cut(s)	38, 124, 132, 134, 168, 170
LmnI	GCTCC	2 cut(s)	539, 601
Lsp1109I	GCAGC	6 cut(s)	41, 71, 82, 87, 104, 116
LweI	GCATC	2 cut(s)	310, 473
MaeI	CTAG	2 cut(s)	246, 555
MaeIII	GTNAC	3 cut(s)	205, 229, 393
MbiI	CCGCTC	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	543, 569, 579
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	502
MseI	TTAA	2 cut(s)	267, 627
MspR9I	CCNGG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	4 cut(s)	134, 163, 170, 172
MwoI	GCNNNNNNNGC	7 cut(s)	81, 84, 101, 104, 123, 169, 334
NlaIII	CATG	5 cut(s)	130, 389, 394, 587, 623
NmuCI	GTSAC	3 cut(s)	205, 229, 393
NspI	RCATGY	2 cut(s)	394, 623
PagI	TCATGA	1 cut(s)	583
PauI	GCGCGC	2 cut(s)	132, 168
PctI	GAATGC	1 cut(s)	337
PkrI	GCNGC	7 cut(s)	56, 77, 86, 97, 106, 119, 216
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	3 cut(s)	23, 59, 100
PteI	GCGCGC	2 cut(s)	132, 168
RsaI	GTAC	2 cut(s)	559, 655
RsaNI	GTAC	2 cut(s)	558, 654
SaqAI	TTAA	2 cut(s)	267, 627
SatI	GCNGC	7 cut(s)	55, 76, 85, 96, 105, 118, 215
Sau96I	GGNCC	1 cut(s)	524
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	6 cut(s)	119, 373, 457, 505, 598, 644
SfaNI	GCATC	2 cut(s)	310, 473
SfcI	CTRYAG	4 cut(s)	19, 55, 96, 141
SinI	GGWCC	1 cut(s)	524
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	3 cut(s)	543, 569, 579
SsiI	CCGC	3 cut(s)	163, 215, 427
SspMI	CTAG	2 cut(s)	246, 555
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	2 cut(s)	41, 70
TaaI	ACNGT	3 cut(s)	65, 262, 562
TaqI	TCGA	1 cut(s)	477
TaqII	GACCGA	1 cut(s)	541
TasI	AATT	3 cut(s)	543, 569, 579
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	267, 627
Tru9I	TTAA	2 cut(s)	267, 627
TscAI	CASTG	5 cut(s)	70, 265, 294, 436, 502
TseFI	GTSAC	3 cut(s)	205, 229, 393
TseI	GCWGC	6 cut(s)	54, 75, 84, 95, 104, 117
Tsp45I	GTSAC	3 cut(s)	205, 229, 393
TspDTI	ATGAA	3 cut(s)	266, 392, 572
TspGWI	ACGGA	2 cut(s)	28, 624
TspRI	CASTG	5 cut(s)	70, 265, 294, 436, 502
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	1 cut(s)	579
XceI	RCATGY	2 cut(s)	394, 623
XmiI	GTMKAC	1 cut(s)	367
XspI	CTAG	2 cut(s)	246, 555
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.