Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Reverse (-)

80573 .. 83300

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000548.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggggatgaggatccaggaaagaggggatgtggtgatgggtgccccgcttgttcaacctggtgatcactacttctggtttggatgcccccgcttcatgctcttcctcatccactttgttttgttccaggtagttcaacttgctagtataatatctttacagtacttgatatttgtacttattctcaccagctgccaatttgtgctttcttcctcttcagaatgcatttcagctggccttctttgcgtggagtgcattcatctattgcacaatgtcaacaaccgcagcgatgaggatgacttgtttccacctcctgaagcatcaatcgtcgtcgaaatggaacatttggacactgaagggtcacaaaggaagaatgttggacagagtgaaagagaagcagttaggcaaactagtactgttagagaattagaccaaattcatgagcctccagctccaagcccctctcaggctgagcatgtagttaaaagtccgtcaagcttctcatttgtacatggacgaaccagcggcggtggtggtgaaggggatgaggaagaggttgctggagatggccgcatctacgccgtgttctggatctccgatacctcctccccaatccctgctcttctcatcgatacaaactggcatagtattttgccgttccaaactggcatcaagttcgaagccaatttagggattctagtgatggagagaaacgagaggccggtcttgaagctcccgcccaattctgccagatcgtttcggactcccaagagcgctggcgacggcgaaggcggtggagaatcggaggagggaagggaggatgacgacggaagaggcggagcgaggaaggtggcaacgcggcgaaggttgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

291

Amino Acids

32.07

Weight (kDa)

5.08

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	1 cut(s)	859
AclWI	GGATC	3 cut(s)	7, 20, 599
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	3 cut(s)	201, 336, 375
AfaI	GTAC	4 cut(s)	164, 177, 415, 510
AfeI	AGCGCT	1 cut(s)	775
AfiI	CCNNNNNNNGG	3 cut(s)	466, 588, 690
AgsI	TTSAA	3 cut(s)	56, 137, 730
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	3 cut(s)	15, 58, 126
AluBI	AGCT	5 cut(s)	192, 233, 452, 498, 733
AluI	AGCT	5 cut(s)	192, 233, 452, 498, 733
AlwI	GGATC	3 cut(s)	7, 20, 599
Aor51HI	AGCGCT	1 cut(s)	775
AoxI	GGCC	3 cut(s)	235, 568, 719
ApeKI	GCWGC	2 cut(s)	192, 285
ApoI	RAATTY	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	776
AsuHPI	GGTGA	4 cut(s)	46, 74, 178, 548
AsuII	TTCGAA	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	179, 297
BccI	CCATC	3 cut(s)	31, 560, 697
BceAI	ACGGC	3 cut(s)	566, 640, 799
BcgI	CGANNNNNNTGC	2 cut(s)	658, 692
BciT130I	CCWGG	3 cut(s)	17, 60, 128
BclI	TGATCA	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	3 cut(s)	144, 411, 698
BfoI	RGCGCY	1 cut(s)	777
BisI	GCNGC	5 cut(s)	193, 286, 526, 571, 860
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	5 cut(s)	194, 287, 527, 572, 861
BmcAI	AGTACT	2 cut(s)	164, 415
Bme1390I	CCNGG	3 cut(s)	17, 60, 128
BmiI	GGNNCC	2 cut(s)	14, 43
BmrFI	CCNGG	3 cut(s)	17, 60, 128
BmsI	GCATC	4 cut(s)	74, 329, 582, 678
BpmI	CTGGAG	2 cut(s)	432, 582
Bpu1102I	GCTNAGC	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	678
Bsa29I	ATCGAT	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	3 cut(s)	466, 588, 690
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	2 cut(s)	644, 670
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	3 cut(s)	17, 60, 128
BseCI	ATCGAT	1 cut(s)	630
BseGI	GGATG	7 cut(s)	12, 34, 89, 108, 301, 550, 826
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	3 cut(s)	466, 588, 690
BseMII	CTCAG	2 cut(s)	462, 479
BseNI	ACTGG	2 cut(s)	644, 670
BseRI	GAGGAG	2 cut(s)	595, 821
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	179, 297
Bsh1236I	CGCG	1 cut(s)	859
BshFI	GGCC	3 cut(s)	237, 570, 721
BshNI	GGYRCC	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	722
BslI	CCNNNNNNNGG	3 cut(s)	466, 588, 690
BsmI	GAATGC	2 cut(s)	227, 255
BsnI	GGCC	3 cut(s)	237, 570, 721
Bsp119I	TTCGAA	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	12, 64, 591, 752
Bsp1720I	GCTNAGC	1 cut(s)	471
BspANI	GGCC	3 cut(s)	237, 570, 721
BspCNI	CTCAG	2 cut(s)	463, 478
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	1 cut(s)	859
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	14, 43
BspPI	GGATC	3 cut(s)	7, 20, 599
BspQI	GCTCTTC	2 cut(s)	107, 627
BspT104I	TTCGAA	1 cut(s)	678
BspT107I	GGYRCC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	644, 670
BssAI	RCCGGY	1 cut(s)	721
BssMI	GATC	4 cut(s)	12, 64, 591, 752
Bst2UI	CCWGG	3 cut(s)	17, 60, 128
Bst4CI	ACNGT	2 cut(s)	162, 418
Bst6I	CTCTTC	5 cut(s)	107, 220, 546, 627, 826
BstAUI	TGTACA	1 cut(s)	508
BstBI	TTCGAA	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	235, 778
BstDEI	CTNAG	2 cut(s)	465, 471
BstF5I	GGATG	7 cut(s)	12, 34, 89, 108, 301, 550, 826
BstFNI	CGCG	1 cut(s)	859
BstH2I	RGCGCY	1 cut(s)	777
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	4 cut(s)	15, 67, 594, 755
BstMBI	GATC	4 cut(s)	12, 64, 591, 752
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 252, 868
BstNI	CCWGG	3 cut(s)	17, 60, 128
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	15, 58, 126
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	1 cut(s)	859
BstV1I	GCAGC	2 cut(s)	179, 297
BstX2I	RGATCY	2 cut(s)	12, 591
BstYI	RGATCY	2 cut(s)	12, 591
Bsu15I	ATCGAT	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	237, 570, 721
BsuTUI	ATCGAT	1 cut(s)	630
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	7 cut(s)	12, 34, 89, 108, 301, 550, 826
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	235, 778
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	776
Cfr10I	RCCGGY	1 cut(s)	721
ClaI	ATCGAT	1 cut(s)	630
CsiI	ACCWGGT	1 cut(s)	58
Csp6I	GTAC	4 cut(s)	163, 176, 414, 509
CviAII	CATG	4 cut(s)	97, 440, 476, 512
CviQI	GTAC	4 cut(s)	163, 176, 414, 509
DdeI	CTNAG	2 cut(s)	465, 471
DpnI	GATC	4 cut(s)	14, 66, 593, 754
DpnII	GATC	4 cut(s)	12, 64, 591, 752
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	5 cut(s)	107, 220, 546, 627, 826
EarI	CTCTTC	5 cut(s)	107, 220, 546, 627, 826
EciI	GGCGGA	1 cut(s)	852
Eco47III	AGCGCT	1 cut(s)	775
Eco57I	CTGAAG	3 cut(s)	201, 336, 375
EcoRII	CCWGG	3 cut(s)	15, 58, 126
EcoT22I	ATGCAT	1 cut(s)	227
FaeI	CATG	4 cut(s)	100, 443, 479, 515
FaiI	YATR	6 cut(s)	98, 149, 441, 477, 513, 645
FatI	CATG	4 cut(s)	96, 439, 475, 511
FauI	CCCGC	3 cut(s)	54, 98, 744
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	193, 286, 526, 571, 860
FokI	GGATG	7 cut(s)	19, 41, 95, 96, 308, 557, 833
Fsp4HI	GCNGC	5 cut(s)	193, 286, 526, 571, 860
FspBI	CTAG	3 cut(s)	144, 411, 698
GlaI	GCGC	1 cut(s)	775
GluI	GCNGC	5 cut(s)	193, 286, 526, 571, 860
GsuI	CTGGAG	2 cut(s)	432, 582
HaeII	RGCGCY	1 cut(s)	777
HaeIII	GGCC	3 cut(s)	237, 570, 721
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	1 cut(s)	776
Hin1II	CATG	4 cut(s)	100, 443, 479, 515
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	3 cut(s)	694, 763, 800
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	4 cut(s)	46, 74, 178, 548
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	220, 598, 762, 805
Hpy188III	TCNNGA	4 cut(s)	314, 440, 589, 727
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	4 cut(s)	332, 335, 785, 830
HpyAV	CCTTC	7 cut(s)	248, 350, 533, 782, 807, 841, 858
HpyCH4III	ACNGT	2 cut(s)	162, 418
HpyCH4V	TGCA	4 cut(s)	225, 255, 268, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 252, 868
HpyF3I	CTNAG	2 cut(s)	465, 471
Hsp92II	CATG	4 cut(s)	100, 443, 479, 515
HspAI	GCGC	1 cut(s)	774
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	12, 64, 591, 752
LguI	GCTCTTC	2 cut(s)	107, 627
LmnI	GCTCC	3 cut(s)	457, 738, 839
Lsp1109I	GCAGC	2 cut(s)	179, 297
LweI	GCATC	4 cut(s)	74, 329, 582, 678
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	3 cut(s)	144, 411, 698
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	4 cut(s)	14, 66, 593, 754
MboI	GATC	4 cut(s)	12, 64, 591, 752
MboII	GAAGA	7 cut(s)	94, 201, 207, 382, 563, 614, 843
MflI	RGATCY	2 cut(s)	12, 591
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	5 cut(s)	197, 425, 435, 685, 742
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	227
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	3 cut(s)	192, 233, 525
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	3 cut(s)	17, 60, 128
Mva1269I	GAATGC	2 cut(s)	227, 255
MvaI	CCWGG	3 cut(s)	17, 60, 128
MvnI	CGCG	1 cut(s)	859
MwoI	GCNNNNNNNGC	3 cut(s)	243, 252, 868
NdeII	GATC	4 cut(s)	12, 64, 591, 752
NlaIII	CATG	4 cut(s)	100, 443, 479, 515
NlaIV	GGNNCC	2 cut(s)	14, 43
NmuCI	GTSAC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	678
PagI	TCATGA	1 cut(s)	439
PciSI	GCTCTTC	2 cut(s)	107, 627
PctI	GAATGC	2 cut(s)	227, 255
PfeI	GAWTC	2 cut(s)	694, 800
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	5 cut(s)	194, 287, 527, 572, 861
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
Psp6I	CCWGG	3 cut(s)	15, 58, 126
PspGI	CCWGG	3 cut(s)	15, 58, 126
PspN4I	GGNNCC	2 cut(s)	14, 43
PsuI	RGATCY	2 cut(s)	12, 591
PvuII	CAGCTG	2 cut(s)	192, 233
RsaI	GTAC	4 cut(s)	164, 177, 415, 510
RsaNI	GTAC	4 cut(s)	163, 176, 414, 509
SapI	GCTCTTC	2 cut(s)	107, 627
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	193, 286, 526, 571, 860
Sau3AI	GATC	4 cut(s)	12, 64, 591, 752
ScaI	AGTACT	2 cut(s)	164, 415
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	3 cut(s)	17, 60, 128
SduI	GDGCHC	1 cut(s)	46
SexAI	ACCWGGT	1 cut(s)	58
SfaNI	GCATC	4 cut(s)	74, 329, 582, 678
SfuI	TTCGAA	1 cut(s)	678
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	5 cut(s)	197, 425, 435, 685, 742
SspMI	CTAG	3 cut(s)	144, 411, 698
StyD4I	CCNGG	3 cut(s)	15, 58, 126
TaaI	ACNGT	2 cut(s)	162, 418
TaqI	TCGA	3 cut(s)	333, 630, 678
TasI	AATT	5 cut(s)	197, 425, 435, 685, 742
TatI	WGTACW	4 cut(s)	162, 175, 413, 508
TauI	GCSGC	3 cut(s)	528, 573, 862
TfiI	GAWTC	2 cut(s)	694, 800
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	2 cut(s)	192, 285
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	3 cut(s)	85, 248, 428
TspGWI	ACGGA	2 cut(s)	480, 843
TspRI	CASTG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	435
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	3 cut(s)	144, 411, 698
ZrmI	AGTACT	2 cut(s)	164, 415
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.