Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Reverse (-)

41752672 .. 41761401

Gene Structure 8730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAAACTTGAATATGAGCGTACATTAGAGAAAACACCAACATGGGCAGTTGCTGTGGTCTGTTTTGTGTTGCTTGTAATATCAATTTTCATTGAGCATGTCATAAACTTCATAGGAAAGTGGTTTAAAAGTAGACACAAGCGAGCTCTCTATGAAGCTCTTGAGAAGCTCAAATCAGAGCTTATGCTGTTGGGATTCCTGTCCTTGCTCCTAACAGTTCTACAAGATCCAATCGCTGGTATATGTATACCGAAGAGTGTTGCAGCCACTTGGCATCCTTGCAATGATGCCACTCCAGTTAGTAAGGCTAGAAAACTTCATGAATCCTCAGATTCTGTCTTCAGTTTCCGGCGCAAATTAGCCACAAAAGGATATGATAAGTGCACGAAGAATATGGGTTCTAGTATGAAACCCACTGTTTTTAATGAGGGAGTGGCAGAAGCAGTGAAAAGTTGGCATCACAAAGCAAAAAAGAAAGTAAAGCACAGCCTGCATTCAGAGAGAACCACACCATTCTCAAGTAGACCTGGAACTCCTACACATGGCATGTCACCAGTTCATCTATTGCAGAATGTCAACAACCGCAGCGATGAGGATGACTTGTTTCCACCTCCAGAAGCATCAATAGTCGTTGAAATGGAACATTTGGACACTGAAGGGTCACAAAAGAACAATGTTGGACCGAGTGAAAGAGGAGCAATTAGGCAAACTAGTACTGTTAGAGAATTAGGCCAAATTCATGAGCCTCCAGCTCCAAGCCCCTCTCAGGCTCAGCATGTAGTTAAAAGTCCGTCAAGCTTCTCATTTGGTACATCAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

274

Amino Acids

30.56

Weight (kDa)

9.46

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	6 - 130	3.3e-46	Mlo family
Mlo	PF03094	131 - 192	5.2e-16	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	3 cut(s)	133, 247, 523
AciI	CCGC	1 cut(s)	583
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	735
AcuI	CTGAAG	2 cut(s)	325, 675
AfaI	GTAC	3 cut(s)	22, 715, 811
AfiI	CCNNNNNNNGG	3 cut(s)	236, 542, 766
AgsI	TTSAA	2 cut(s)	11, 635
AhlI	ACTAGT	1 cut(s)	710
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	6 cut(s)	146, 158, 169, 181, 752, 798
AluI	AGCT	6 cut(s)	146, 158, 169, 181, 752, 798
Alw21I	GWGCWC	2 cut(s)	148, 386
Alw44I	GTGCAC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	2 cut(s)	53, 335
AoxI	GGCC	1 cut(s)	730
ApaLI	GTGCAC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	263, 585
ApoI	RAATTY	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	1 cut(s)	543
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	148, 386
BbvI	GCAGC	2 cut(s)	275, 597
BciT130I	CCWGG	1 cut(s)	528
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	3 cut(s)	309, 402, 711
BisI	GCNGC	2 cut(s)	264, 586
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	2 cut(s)	265, 587
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	680
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	4 cut(s)	277, 283, 466, 629
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	3 cut(s)	279, 597, 732
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	2 cut(s)	182, 502
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 542, 766
Bse1I	ACTGG	2 cut(s)	296, 554
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	274, 601
BseLI	CCNNNNNNNGG	3 cut(s)	236, 542, 766
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	342, 779, 785
BseNI	ACTGG	2 cut(s)	296, 554
BseRI	GAGGAG	1 cut(s)	708
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	275, 597
BshFI	GGCC	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	148, 386
BsiSI	CCGG	1 cut(s)	349
BslI	CCNNNNNNNGG	3 cut(s)	236, 542, 766
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	732
Bsp1286I	GDGCHC	2 cut(s)	148, 386
Bsp143I	GATC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	1 cut(s)	583
BspANI	GGCC	1 cut(s)	732
BspCNI	CTCAG	3 cut(s)	341, 778, 784
BspHI	TCATGA	2 cut(s)	319, 739
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	296, 554
BssMI	GATC	1 cut(s)	226
BssNAI	GTATAC	1 cut(s)	248
Bst1107I	GTATAC	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	217, 418, 718
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	144, 491
BstDEI	CTNAG	3 cut(s)	328, 765, 771
BstF5I	GGATG	2 cut(s)	274, 601
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	3 cut(s)	101, 550, 779
BstSCI	CCNGG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	275, 597
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BstZ17I	GTATAC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	274, 601
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	3 cut(s)	414, 450, 651
Cac8I	GCNNGC	2 cut(s)	144, 491
CaiI	CAGNNNCTG	2 cut(s)	53, 335
CciI	TCATGA	2 cut(s)	319, 739
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	680
Csp6I	GTAC	3 cut(s)	21, 714, 810
CviAII	CATG	7 cut(s)	42, 98, 320, 542, 547, 740, 776
CviQI	GTAC	3 cut(s)	21, 714, 810
DdeI	CTNAG	3 cut(s)	328, 765, 771
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	680
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	325, 675
EcoICRI	GAGCTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	7 cut(s)	45, 101, 323, 545, 550, 743, 779
FatI	CATG	7 cut(s)	41, 97, 319, 541, 546, 739, 775
FblI	GTMKAC	3 cut(s)	133, 247, 523
Fnu4HI	GCNGC	2 cut(s)	264, 586
FokI	GGATG	2 cut(s)	261, 608
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	264, 586
FspBI	CTAG	3 cut(s)	309, 402, 711
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	264, 586
GsuI	CTGGAG	3 cut(s)	279, 597, 732
HaeIII	GGCC	1 cut(s)	732
HapII	CCGG	1 cut(s)	349
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	7 cut(s)	45, 101, 323, 545, 550, 743, 779
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	796
HinfI	GANTC	3 cut(s)	195, 323, 332
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	1 cut(s)	543
Hpy166II	GTNNAC	5 cut(s)	134, 248, 384, 524, 577
Hpy188I	TCNGA	3 cut(s)	178, 331, 499
Hpy188III	TCNNGA	5 cut(s)	161, 320, 614, 740, 816
Hpy8I	GTNNAC	5 cut(s)	134, 248, 384, 524, 577
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	3 cut(s)	217, 418, 718
HpyCH4V	TGCA	5 cut(s)	263, 282, 384, 493, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	3 cut(s)	328, 765, 771
Hsp92II	CATG	7 cut(s)	45, 101, 323, 545, 550, 743, 779
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	3 cut(s)	213, 695, 757
Lsp1109I	GCAGC	2 cut(s)	275, 597
LweI	GCATC	4 cut(s)	277, 283, 466, 629
MaeI	CTAG	3 cut(s)	309, 402, 711
MaeIII	GTNAC	2 cut(s)	549, 660
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	3 cut(s)	265, 331, 400
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	2 cut(s)	148, 386
MluCI	AATT	5 cut(s)	84, 356, 699, 725, 735
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	7 cut(s)	337, 421, 586, 621, 686, 756, 772
MseI	TTAA	3 cut(s)	126, 423, 783
MslI	CAYNNNNRTG	1 cut(s)	40
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	490
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	7 cut(s)	45, 101, 323, 545, 550, 743, 779
NmuCI	GTSAC	2 cut(s)	549, 660
NspI	RCATGY	3 cut(s)	101, 550, 779
PagI	TCATGA	2 cut(s)	319, 739
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	3 cut(s)	195, 323, 332
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	265, 587
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	680
PstNI	CAGNNNCTG	2 cut(s)	53, 335
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	22, 715, 811
RsaNI	GTAC	3 cut(s)	21, 714, 810
RseI	CAYNNNNRTG	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	126, 423, 783
SatI	GCNGC	2 cut(s)	264, 586
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	680
ScaI	AGTACT	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	2 cut(s)	148, 386
SetI	ASST	8 cut(s)	148, 160, 171, 183, 529, 613, 754, 800
SfaNI	GCATC	4 cut(s)	277, 283, 466, 629
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	161, 517
SmoI	CTYRAG	2 cut(s)	161, 517
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	5 cut(s)	84, 356, 699, 725, 735
SsiI	CCGC	1 cut(s)	583
SspMI	CTAG	3 cut(s)	309, 402, 711
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	3 cut(s)	217, 418, 718
TaqII	GACCGA	1 cut(s)	697
TasI	AATT	5 cut(s)	84, 356, 699, 725, 735
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	195, 323, 332
Tru1I	TTAA	3 cut(s)	126, 423, 783
Tru9I	TTAA	3 cut(s)	126, 423, 783
TscAI	CASTG	3 cut(s)	421, 450, 658
TseFI	GTSAC	2 cut(s)	549, 660
TseI	GCWGC	2 cut(s)	263, 585
Tsp45I	GTSAC	2 cut(s)	549, 660
TspDTI	ATGAA	9 cut(s)	17, 79, 100, 168, 308, 336, 422, 548, 728
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	3 cut(s)	421, 450, 658
Van91I	CCANNNNNTGG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	1 cut(s)	735
XceI	RCATGY	3 cut(s)	101, 550, 779
XmiI	GTMKAC	3 cut(s)	133, 247, 523
XspI	CTAG	3 cut(s)	309, 402, 711
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.