Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Reverse (-)

118729 .. 121680

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000548.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atggaacttgaatatgagcgtacattagagaaaacaccaacatgggcagttgctgtggtctgttttgtgttgcttgtaatatcaattttcattgagcatgtcataaacttcataggaaagtggtttaaaagtagacacaagcgagctctctatgaagctcttgagaagctcaaatcagagcttatgctgttgggattcctgtccttgctcctaacagttctacaagatccaatcgctggtatatgtataccgaagagcgttgcagccacttggcatccttgcaatgatgccacttcagatagtaaggctagaaaacttcatgaatcctcagattctgtcttcagtttccggcgcaaattagccacaaaaggatatgataattgcacggagaatggtaaagttgcctttgtatctgcatatgggattcaccagctccatgtatttatctttgtgctagcagtttttcatgtgctctactgcatcacaaccttggctttgggaagacacaagatgagaatatggaagtattgggagaatgagacaaaaacagttgaataccagttcagtactgatccagaaagatttaggtatgcgagggatacatcattcggtagaaggcatttgaacttctggagccagtcaccagttttcctttggattgtgtgcttcttcagacagttcttcaggtcagttactaagactgattacctgactctgagacatggctttatcatggcacatttagcacctgggagtgaaacgacctttgattttcggaagtacataagtagatctcttgaagatgacttcttagttattgttgagatcagtccaattatatggttctctgcagtgttgttcctgttgtctaacgcatatggatggtattcttatctctggctgccatttatctccttatttataatcctcttggtgggaactaaactacaagtgattataaccatgatggggatgaggatccaggaaagagggggtgtggtgatgggtgcaccgcttgttcaacctggtgatcactacttctggtttggacgcccccgcttcatgctcttcctcatccactttgttttgttccagaatgcatttcagctggccttctttgcatggagtacatggcagtttggcatagattcttgcttccaccaaacccctgaagatatcgccatcaggatctcaatggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

400

Amino Acids

46.74

Weight (kDa)

9.06

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	923, 959
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	2 cut(s)	133, 247
AciI	CCGC	2 cut(s)	1013, 1057
AclWI	GGATC	5 cut(s)	221, 566, 973, 986, 1196
AcuI	CTGAAG	5 cut(s)	279, 325, 655, 667, 1191
AcyI	GRCGYC	1 cut(s)	1051
AfaI	GTAC	4 cut(s)	22, 568, 782, 1129
AfiI	CCNNNNNNNGG	3 cut(s)	236, 934, 969
AgsI	TTSAA	5 cut(s)	11, 554, 625, 800, 1022
AjnI	CCWGG	3 cut(s)	748, 981, 1024
AluBI	AGCT	6 cut(s)	146, 158, 169, 181, 433, 1108
AluI	AGCT	6 cut(s)	146, 158, 169, 181, 433, 1108
Alw21I	GWGCWC	3 cut(s)	148, 474, 1012
Alw26I	GTCTC	2 cut(s)	533, 712
Alw44I	GTGCAC	1 cut(s)	1008
AlwI	GGATC	5 cut(s)	221, 566, 973, 986, 1196
AlwNI	CAGNNNCTG	2 cut(s)	53, 335
AoxI	GGCC	1 cut(s)	1110
ApaLI	GTGCAC	1 cut(s)	1008
ApeKI	GCWGC	2 cut(s)	263, 901
AspLEI	GCGC	1 cut(s)	354
AsuHPI	GGTGA	4 cut(s)	419, 633, 1012, 1040
AsuNHI	GCTAGC	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	1012
BamHI	GGATCC	1 cut(s)	978
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	2 cut(s)	331, 508
Bbv12I	GWGCWC	3 cut(s)	148, 474, 1012
BbvI	GCAGC	2 cut(s)	275, 888
BccI	CCATC	4 cut(s)	876, 961, 997, 1190
BciT130I	CCWGG	3 cut(s)	750, 983, 1026
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	1030
BcoDI	GTCTC	2 cut(s)	533, 712
BfaI	CTAG	2 cut(s)	309, 455
BfmI	CTRYAG	1 cut(s)	849
BfuI	GTATCC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	791
BisI	GCNGC	2 cut(s)	264, 902
BlsI	GCNGC	2 cut(s)	265, 903
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	750, 983, 1026
BmiI	GGNNCC	2 cut(s)	635, 980
BmrFI	CCNGG	3 cut(s)	750, 983, 1026
BmsI	GCATC	3 cut(s)	277, 283, 489
BmtI	GCTAGC	1 cut(s)	458
BpiI	GAAGAC	2 cut(s)	331, 508
BpmI	CTGGAG	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	977
BsaHI	GRCGYC	1 cut(s)	1051
BsaJI	CCNNGG	2 cut(s)	489, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 934, 969
Bse1I	ACTGG	3 cut(s)	559, 637, 644
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	977
BseBI	CCWGG	3 cut(s)	750, 983, 1026
BseDI	CCNNGG	2 cut(s)	489, 749
BseGI	GGATG	4 cut(s)	274, 887, 978, 1074
BseJI	GATNNNNATC	1 cut(s)	977
BseLI	CCNNNNNNNGG	3 cut(s)	236, 934, 969
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	342, 707
BseNI	ACTGG	3 cut(s)	559, 637, 644
BseSI	GKGCMC	1 cut(s)	1012
BseXI	GCAGC	2 cut(s)	275, 888
BshFI	GGCC	1 cut(s)	1112
BsiHKAI	GWGCWC	3 cut(s)	148, 474, 1012
BsiSI	CCGG	1 cut(s)	349
BslI	CCNNNNNNNGG	3 cut(s)	236, 934, 969
BsmAI	GTCTC	2 cut(s)	533, 712
BsmI	GAATGC	1 cut(s)	1102
BsnI	GGCC	1 cut(s)	1112
Bsp1286I	GDGCHC	3 cut(s)	148, 474, 1012
Bsp143I	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
BspACI	CCGC	2 cut(s)	1013, 1057
BspANI	GGCC	1 cut(s)	1112
BspCNI	CTCAG	2 cut(s)	341, 708
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	635, 980
BspMAI	CTGCAG	1 cut(s)	853
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	5 cut(s)	221, 566, 973, 986, 1196
BspQI	GCTCTTC	2 cut(s)	248, 1073
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	559, 637, 644
BssECI	CCNNGG	2 cut(s)	489, 749
BssMI	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
BssNAI	GTATAC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	1051
BssT1I	CCWWGG	1 cut(s)	489
Bst1107I	GTATAC	1 cut(s)	248
Bst2UI	CCWGG	3 cut(s)	750, 983, 1026
Bst4CI	ACNGT	3 cut(s)	217, 550, 678
Bst6I	CTCTTC	2 cut(s)	248, 1073
BstACI	GRCGYC	1 cut(s)	1051
BstC8I	GCNNGC	3 cut(s)	144, 456, 1110
BstDEI	CTNAG	4 cut(s)	328, 696, 716, 811
BstF5I	GGATG	4 cut(s)	274, 887, 978, 1074
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	7 cut(s)	229, 574, 794, 828, 981, 1033, 1191
BstMAI	GTCTC	2 cut(s)	533, 712
BstMBI	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
BstMWI	GCNNNNNNNGC	2 cut(s)	743, 1118
BstNI	CCWGG	3 cut(s)	750, 983, 1026
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	3 cut(s)	748, 981, 1024
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	1012
BstV1I	GCAGC	2 cut(s)	275, 888
BstV2I	GAAGAC	2 cut(s)	331, 508
BstX2I	RGATCY	4 cut(s)	226, 791, 978, 1188
BstXI	CCANNNNNNTGG	1 cut(s)	840
BstYI	RGATCY	4 cut(s)	226, 791, 978, 1188
BstZ17I	GTATAC	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	1112
BtsCI	GGATG	4 cut(s)	274, 887, 978, 1074
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	3 cut(s)	144, 456, 1110
CaiI	CAGNNNCTG	2 cut(s)	53, 335
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	1 cut(s)	354
CseI	GACGC	1 cut(s)	1059
CsiI	ACCWGGT	1 cut(s)	1024
Csp6I	GTAC	4 cut(s)	21, 567, 781, 1128
CviQI	GTAC	4 cut(s)	21, 567, 781, 1128
DdeI	CTNAG	4 cut(s)	328, 696, 716, 811
DpnI	GATC	7 cut(s)	228, 573, 793, 827, 980, 1032, 1190
DpnII	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	248, 1073
EarI	CTCTTC	2 cut(s)	248, 1073
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	1177
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	5 cut(s)	279, 325, 655, 667, 1191
EcoICRI	GAGCTC	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	748, 981, 1024
EcoRV	GATATC	1 cut(s)	1177
EcoT14I	CCWWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	1102
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	489
FauI	CCCGC	1 cut(s)	1064
FauNDI	CATATG	2 cut(s)	418, 877
FbaI	TGATCA	1 cut(s)	1030
FblI	GTMKAC	2 cut(s)	133, 247
Fnu4HI	GCNGC	2 cut(s)	264, 902
FokI	GGATG	4 cut(s)	261, 894, 985, 1061
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	264, 902
FspBI	CTAG	2 cut(s)	309, 455
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	264, 902
GsuI	CTGGAG	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	1112
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	1059
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	1051
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	6 cut(s)	195, 323, 332, 424, 712, 1148
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	4 cut(s)	419, 633, 1012, 1040
Hpy166II	GTNNAC	3 cut(s)	134, 248, 1010
Hpy188I	TCNGA	6 cut(s)	178, 298, 331, 674, 717, 777
Hpy188III	TCNNGA	7 cut(s)	161, 320, 575, 631, 797, 1093, 1186
Hpy8I	GTNNAC	3 cut(s)	134, 248, 1010
HpyAV	CCTTC	2 cut(s)	609, 1123
HpyCH4III	ACNGT	3 cut(s)	217, 550, 678
HpyCH4V	TGCA	9 cut(s)	263, 282, 384, 416, 480, 851, 1010, 1100, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	743, 1118
HpyF3I	CTNAG	4 cut(s)	328, 696, 716, 811
Hsp92I	GRCGYC	1 cut(s)	1051
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	1030
Kzo9I	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
LguI	GCTCTTC	2 cut(s)	248, 1073
LmnI	GCTCC	3 cut(s)	213, 438, 633
Lsp1109I	GCAGC	2 cut(s)	275, 888
LweI	GCATC	3 cut(s)	277, 283, 489
MabI	ACCWGGT	1 cut(s)	1024
MaeI	CTAG	2 cut(s)	309, 455
MaeIII	GTNAC	2 cut(s)	639, 691
MalI	GATC	7 cut(s)	228, 573, 793, 827, 980, 1032, 1190
MboI	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
MboII	GAAGA	8 cut(s)	265, 331, 513, 661, 673, 812, 1060, 1184
MflI	RGATCY	4 cut(s)	226, 791, 978, 1188
MhlI	GDGCHC	3 cut(s)	148, 474, 1012
MluCI	AATT	4 cut(s)	84, 356, 379, 834
MlyI	GAGTC	1 cut(s)	706
MnlI	CCTC	6 cut(s)	337, 588, 938, 969, 983, 1082
Mph1103I	ATGCAT	1 cut(s)	1102
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	40, 880
MspA1I	CMGCKG	1 cut(s)	1108
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	3 cut(s)	750, 983, 1026
Mva1269I	GAATGC	1 cut(s)	1102
MvaI	CCWGG	3 cut(s)	750, 983, 1026
MwoI	GCNNNNNNNGC	2 cut(s)	743, 1118
NdeI	CATATG	2 cut(s)	418, 877
NdeII	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
NheI	GCTAGC	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	635, 980
NmuCI	GTSAC	1 cut(s)	639
NsiI	ATGCAT	1 cut(s)	1102
NspI	RCATGY	1 cut(s)	101
PagI	TCATGA	1 cut(s)	319
PciSI	GCTCTTC	2 cut(s)	248, 1073
PctI	GAATGC	1 cut(s)	1102
PfeI	GAWTC	5 cut(s)	195, 323, 332, 424, 1148
PflMI	CCANNNNNTGG	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	981
PkrI	GCNGC	2 cut(s)	265, 903
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PsiI	TTATAA	2 cut(s)	923, 959
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	3 cut(s)	748, 981, 1024
PspGI	CCWGG	3 cut(s)	748, 981, 1024
PspN4I	GGNNCC	2 cut(s)	635, 980
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	2 cut(s)	53, 335
PsuI	RGATCY	4 cut(s)	226, 791, 978, 1188
PvuII	CAGCTG	1 cut(s)	1108
RsaI	GTAC	4 cut(s)	22, 568, 782, 1129
RsaNI	GTAC	4 cut(s)	21, 567, 781, 1128
RseI	CAYNNNNRTG	2 cut(s)	40, 880
SacI	GAGCTC	1 cut(s)	148
SapI	GCTCTTC	2 cut(s)	248, 1073
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	264, 902
Sau3AI	GATC	7 cut(s)	226, 571, 791, 825, 978, 1030, 1188
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	3 cut(s)	750, 983, 1026
SduI	GDGCHC	3 cut(s)	148, 474, 1012
SexAI	ACCWGGT	1 cut(s)	1024
SfaNI	GCATC	3 cut(s)	277, 283, 489
SfcI	CTRYAG	1 cut(s)	849
SmiMI	CAYNNNNRTG	2 cut(s)	40, 880
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	84, 356, 379, 834
SsiI	CCGC	2 cut(s)	1013, 1057
SspMI	CTAG	2 cut(s)	309, 455
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	3 cut(s)	748, 981, 1024
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	3 cut(s)	217, 550, 678
TasI	AATT	4 cut(s)	84, 356, 379, 834
TatI	WGTACW	3 cut(s)	566, 780, 1127
TfiI	GAWTC	5 cut(s)	195, 323, 332, 424, 1148
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	858
TseFI	GTSAC	1 cut(s)	639
TseI	GCWGC	2 cut(s)	263, 901
Tsp45I	GTSAC	1 cut(s)	639
TspDTI	ATGAA	7 cut(s)	79, 100, 168, 308, 336, 455, 1051
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	858
Van91I	CCANNNNNTGG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	1008
XceI	RCATGY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XmiI	GTMKAC	2 cut(s)	133, 247
XspI	CTAG	2 cut(s)	309, 455
ZrmI	AGTACT	1 cut(s)	568
Zsp2I	ATGCAT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.