Rroxscaffold_1G00020700

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
25200789 .. 25209135
8347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020700.1

Sequence Viewer

Length: 1722 bp
ATGGCGGCATCAACCTCCGGAAGATCGTTGGAGCAAACGCCGACATGGGCCGTCGCCGTCGTCTGTTTTGTTTTGGTTCTAGTCTCAATCATCATCGAATACATAATCGAACTTATAGCAAAGTGGTTGAAGAAGAAACACAAACGAGCTCTTTTCGAAGCACTAGAAAAGATCAAATCAGAGCTTATGCTATTGGGGTTTATATCGCTGCTGCTGACTGTGGGGCAAGGTCCGATATCGAACATATGCATATCGAAGAAAGTGGGAAACACGTGGCATCCGTGTAGCAAGAAGCAGGAGACTGAGATCGAGGAAGAAGAAGAGGTTGAAAGCCCAAGTAGGAAACTGCTGGCAGCGTTTGAATCTGGTTATGGAGGTGGAAGCGCACGCCGCGTTTTGGCGGCTGCGGGCACCGACAAATGTGCAGCCAAGGGAAAAGTTCCATTCATATCTGCGGATGGTATTCATCAACTGCATATATTTATCTTCGTCTTGGCTGTTTTCCACGTACTCTATTGCATTCTCACTATGGCTTTAGGAAGAGCCAAGATGAGAAGTTGGAAGAGGTGGGAAAAAGAAACAAGAACGGATGAATATCAATTCTCACACGACCCAGAGCGGTTCAGATTTGCAAGGGACACATCTTTTGGGAGAAGACATTTAAGTTACTGGACCAAAACACCTTTTCTCATGTGGATTGTTTGTTTTTTCAGACAATTTGTTAGATCAGTTCCCAAAGTTGATTACTTGACCTTGCGGCACGGGTTTATCATGGCACATTTGGCACCTCAAAGCCATCAAAAATTCAATTTCCAAAAGTACATAAACAGATCACTCGAAGAGGATTTCAAGGTGGTTGTGGGAATCAGCCCTCCAATTTGGTGCTTTGCCGTGATCTTTCTACTCTTTAATACTCATGGCTGGTATTCTTATTATTGGCTACCCTTTATCCCACTAATTATCATTCTATTGGTGGGAACCAAGCTACAAGTGATCATAACCAAAATGGGTCTTAGAATTCAAGAAAGAGGAGAAGTTGTGAAGGGTACACCAGTTGTTCAACCTGGTGATGACCTCTTCTGGTTTAACCGCCCTCGCCTCATTCTCTACCTCATCAACTTCGTTCTCTTTCAGAATGCCTTCCAGCTTGCTTTCTTTGCATGGAGTTGGTATGAATTTTCTTTGAAATCTTGCTTTCACGAGCATACTGAGGATATCATCATCAGAGTTTCAATGGGGGTCCTCATACAAATTCTCTGCAGTTATGTCACTCTCCCACTTTATGCCCTCGTCACACAGATGGGCTCTACCATGAAACCAACAATATTCAACGAGAGAGTAGCCACAGCTCTACGCAACTGGCATCACACGGCTAAGAAGCACATCAAACAGAACAAAGGCTCCGTAACCCCAATGTCTAGCCGACCAGGCACTCCATCCCACCATGCTTCCCCCATCCACCTCCTCCGGCATTACCGCAGCGAGGTGGACAGCTTCCACACATCACCGAGAAGATCAAACTTCGACGCTGAACAACGTTATGAAACCGACTCACCCTCCCCCTCGCACCACCTCCATATAGATGGTTCGTTCTCTCACCGACACCAAGTCGAAGTAGGGAACATGGAACATGATCGGGTGGATGTCAACGAGCCCAACTCGGTTCATGCGGCTCCCGCTAACACTCGAGGTTCGCAATCGACTCCCCCAACACGAAATTAA

Protein Analysis

573

Amino Acids

65.87

Weight (kDa)

9.44

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 7 - 492 4.4e-251 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 410, 784
AccBSI CCGCTC 1 cut(s) 619
AccII CGCG 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 17
AclI AACGTT 1 cut(s) 1537
AcsI RAATTY 4 cut(s) 803, 1017, 1175, 1251
AcvI CACGTG 1 cut(s) 273
AfaI GTAC 3 cut(s) 510, 821, 1048
AfiI CCNNNNNNNGG 2 cut(s) 397, 1483
AflIII ACRYGT 1 cut(s) 270
AhdI GACNNNNNGTC 1 cut(s) 1607
AjnI CCWGG 2 cut(s) 1063, 1426
AloI GAACNNNNNNTCC 2 cut(s) 1385, 1417
AluBI AGCT 6 cut(s) 149, 184, 985, 1147, 1349, 1494
AluI AGCT 6 cut(s) 149, 184, 985, 1147, 1349, 1494
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 88, 293
Ama87I CYCGRG 1 cut(s) 1686
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 6 cut(s) 208, 211, 353, 404, 425, 1479
ApoI RAATTY 4 cut(s) 803, 1017, 1175, 1251
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
Asp700I GAANNNNTTC 1 cut(s) 1139
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 4 cut(s) 48, 230, 672, 1240
AsuHPI GGTGA 4 cut(s) 1079, 1497, 1545, 1589
AsuII TTCGAA 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 1686
AvaII GGWCC 3 cut(s) 230, 672, 1240
BaeGI GKGCMC 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 1038, 1071
BanI GGYRCC 2 cut(s) 410, 784
BanII GRGCYC 3 cut(s) 151, 1307, 1656
BauI CACGAG 1 cut(s) 1199
BbrPI CACGTG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 6 cut(s) 195, 198, 365, 391, 437, 1491
BccI CCATC 6 cut(s) 452, 804, 1294, 1444, 1463, 1577
BceAI ACGGC 4 cut(s) 35, 41, 875, 1386
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 2 cut(s) 1065, 1428
BclI TGATCA 1 cut(s) 993
BcoDI GTCTC 2 cut(s) 88, 293
BfaI CTAG 3 cut(s) 80, 164, 1419
BfmI CTRYAG 1 cut(s) 1258
BglI GCCNNNNNGGC 1 cut(s) 1428
Bme1390I CCNGG 2 cut(s) 1065, 1428
Bme18I GGWCC 3 cut(s) 230, 672, 1240
BmeRI GACNNNNNGTC 1 cut(s) 1607
BmeT110I CYCGRG 1 cut(s) 1686
BmgT120I GGNCC 4 cut(s) 48, 230, 672, 1240
BmiI GGNNCC 6 cut(s) 412, 786, 979, 1241, 1402, 1674
BmrFI CCNGG 2 cut(s) 1065, 1428
BmsI GCATC 3 cut(s) 17, 286, 1372
BpiI GAAGAC 1 cut(s) 661
BplI GAGNNNNNCTC 2 cut(s) 1643, 1675
Bpu14I TTCGAA 1 cut(s) 156
BsaAI YACGTR 2 cut(s) 273, 508
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 6 cut(s) 1023, 1053, 1385, 1415, 1541, 1571
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 1483
Bse1I ACTGG 3 cut(s) 674, 1052, 1364
Bse8I GATNNNNATC 1 cut(s) 594
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 2 cut(s) 1065, 1428
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 6 cut(s) 277, 463, 595, 1436, 1455, 1648
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 397, 1483
BseMII CTCAG 2 cut(s) 294, 1200
BseNI ACTGG 3 cut(s) 674, 1052, 1364
BseRI GAGGAG 2 cut(s) 1044, 1454
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 6 cut(s) 195, 198, 365, 391, 437, 1491
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 410, 784
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 1686
BsiSI CCGG 2 cut(s) 18, 1468
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 2 cut(s) 397, 1483
BsmAI GTCTC 2 cut(s) 88, 293
BsmFI GGGAC 1 cut(s) 650
BsmI GAATGC 2 cut(s) 519, 1141
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 1686
Bsp119I TTCGAA 1 cut(s) 156
Bsp1286I GDGCHC 4 cut(s) 151, 413, 1307, 1656
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 295, 1201
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 6 cut(s) 412, 786, 979, 1241, 1402, 1674
BspMAI CTGCAG 1 cut(s) 1262
BspQI GCTCTTC 1 cut(s) 535
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 2 cut(s) 410, 784
BsrBI CCGCTC 1 cut(s) 619
BsrI ACTGG 3 cut(s) 674, 1052, 1364
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
BssSI CACGAG 1 cut(s) 1199
BssT1I CCWWGG 1 cut(s) 429
Bst2BI CACGAG 1 cut(s) 1199
Bst2UI CCWGG 2 cut(s) 1065, 1428
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 5 cut(s) 315, 535, 557, 834, 1082
BstBAI YACGTR 2 cut(s) 273, 508
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 351, 388, 409, 1149
BstDEI CTNAG 4 cut(s) 303, 1013, 1209, 1374
BstF5I GGATG 6 cut(s) 277, 463, 595, 1436, 1455, 1648
BstFNI CGCG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 9 cut(s) 26, 174, 309, 728, 833, 897, 996, 1517, 1636
BstMAI GTCTC 2 cut(s) 88, 293
BstMBI GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
BstMWI GCNNNNNNNGC 5 cut(s) 390, 782, 1157, 1428, 1676
BstNI CCWGG 2 cut(s) 1065, 1428
BstSCI CCNGG 2 cut(s) 1063, 1426
BstSFI CTRYAG 1 cut(s) 1258
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 6 cut(s) 195, 198, 365, 391, 437, 1491
BstV2I GAAGAC 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 1583
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 6 cut(s) 277, 463, 595, 1436, 1455, 1648
Cac8I GCNNGC 4 cut(s) 351, 388, 409, 1149
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 4 cut(s) 48, 230, 672, 1240
CseI GACGC 1 cut(s) 1535
CsiI ACCWGGT 1 cut(s) 1063
Csp6I GTAC 3 cut(s) 509, 820, 1047
CviQI GTAC 3 cut(s) 509, 820, 1047
DdeI CTNAG 4 cut(s) 303, 1013, 1209, 1374
DpnI GATC 9 cut(s) 25, 173, 308, 727, 832, 896, 995, 1516, 1635
DpnII GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
DriI GACNNNNNGTC 1 cut(s) 1607
Eam1104I CTCTTC 5 cut(s) 315, 535, 557, 834, 1082
Eam1105I GACNNNNNGTC 1 cut(s) 1607
EarI CTCTTC 5 cut(s) 315, 535, 557, 834, 1082
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 3 cut(s) 151, 1307, 1656
Eco32I GATATC 2 cut(s) 237, 1216
Eco47I GGWCC 3 cut(s) 230, 672, 1240
Eco53kI GAGCTC 1 cut(s) 149
Eco72I CACGTG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 1686
EcoICRI GAGCTC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 1240
EcoRI GAATTC 1 cut(s) 1017
EcoRII CCWGG 2 cut(s) 1063, 1426
EcoRV GATATC 2 cut(s) 237, 1216
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 3 cut(s) 151, 1307, 1656
ErhI CCWWGG 1 cut(s) 429
FaqI GGGAC 1 cut(s) 650
FauI CCCGC 2 cut(s) 400, 1684
FauNDI CATATG 1 cut(s) 245
FbaI TGATCA 1 cut(s) 993
FokI GGATG 6 cut(s) 264, 470, 602, 1423, 1442, 1655
FriOI GRGCYC 3 cut(s) 151, 1307, 1656
FspBI CTAG 3 cut(s) 80, 164, 1419
GlaI GCGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 18, 1468
HgaI GACGC 1 cut(s) 1535
HhaI GCGC 1 cut(s) 386
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 1648
HindII GTYRAC 1 cut(s) 1648
HinfI GANTC 4 cut(s) 362, 864, 1550, 1702
HpaII CCGG 2 cut(s) 18, 1468
HphI GGTGA 4 cut(s) 1079, 1497, 1545, 1589
Hpy166II GTNNAC 3 cut(s) 1049, 1489, 1648
Hpy188I TCNGA 6 cut(s) 181, 234, 626, 713, 1134, 1226
Hpy188III TCNNGA 3 cut(s) 18, 1022, 1199
Hpy8I GTNNAC 3 cut(s) 1049, 1489, 1648
Hpy99I CGWCG 3 cut(s) 56, 62, 1529
HpyAV CCTTC 2 cut(s) 1036, 1150
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 3 cut(s) 272, 507, 1537
HpyCH4V TGCA 7 cut(s) 249, 425, 475, 519, 632, 1160, 1260
HpyF10VI GCNNNNNNNGC 5 cut(s) 390, 782, 1157, 1428, 1676
HpyF3I CTNAG 4 cut(s) 303, 1013, 1209, 1374
HpySE526I ACGT 3 cut(s) 272, 507, 1537
HspAI GCGC 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
LguI GCTCTTC 1 cut(s) 535
LmnI GCTCC 3 cut(s) 31, 1406, 1678
Lsp1109I GCAGC 6 cut(s) 195, 198, 365, 391, 437, 1491
LweI GCATC 3 cut(s) 17, 286, 1372
MabI ACCWGGT 1 cut(s) 1063
MaeI CTAG 3 cut(s) 80, 164, 1419
MaeII ACGT 3 cut(s) 272, 507, 1537
MaeIII GTNAC 4 cut(s) 665, 1267, 1291, 1405
MalI GATC 9 cut(s) 25, 173, 308, 727, 832, 896, 995, 1516, 1635
MbiI CCGCTC 1 cut(s) 619
MboI GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
MhlI GDGCHC 4 cut(s) 151, 413, 1307, 1656
MlyI GAGTC 2 cut(s) 1544, 1696
MmeI TCCRAC 2 cut(s) 9, 539
Mph1103I ATGCAT 1 cut(s) 251
MroI TCCGGA 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 1139
MseI TTAA 4 cut(s) 662, 909, 1086, 1720
MslI CAYNNNNRTG 2 cut(s) 1298, 1581
MspI CCGG 2 cut(s) 18, 1468
MspR9I CCNGG 2 cut(s) 1065, 1428
Mva1269I GAATGC 2 cut(s) 519, 1141
MvaI CCWGG 2 cut(s) 1065, 1428
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 5 cut(s) 390, 782, 1157, 1428, 1676
NdeI CATATG 1 cut(s) 245
NdeII GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
NlaIV GGNNCC 6 cut(s) 412, 786, 979, 1241, 1402, 1674
NmuCI GTSAC 2 cut(s) 1267, 1291
NsiI ATGCAT 1 cut(s) 251
NspV TTCGAA 1 cut(s) 156
PaeR7I CTCGAG 1 cut(s) 1686
PciSI GCTCTTC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 2 cut(s) 519, 1141
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 2 cut(s) 362, 864
PleI GAGTC 2 cut(s) 1544, 1696
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
PpsI GAGTC 2 cut(s) 1544, 1696
Ppu21I YACGTR 2 cut(s) 273, 508
PpuMI RGGWCCY 1 cut(s) 1240
Psp124BI GAGCTC 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 1537
Psp5II RGGWCCY 1 cut(s) 1240
Psp6I CCWGG 2 cut(s) 1063, 1426
PspCI CACGTG 1 cut(s) 273
PspGI CCWGG 2 cut(s) 1063, 1426
PspN4I GGNNCC 6 cut(s) 412, 786, 979, 1241, 1402, 1674
PspPI GGNCC 4 cut(s) 48, 230, 672, 1240
PspPPI RGGWCCY 1 cut(s) 1240
PspXI VCTCGAGB 1 cut(s) 1686
PstI CTGCAG 1 cut(s) 1262
RsaI GTAC 3 cut(s) 510, 821, 1048
RsaNI GTAC 3 cut(s) 509, 820, 1047
RseI CAYNNNNRTG 2 cut(s) 1298, 1581
SacI GAGCTC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 535
SaqAI TTAA 4 cut(s) 662, 909, 1086, 1720
Sau3AI GATC 9 cut(s) 23, 171, 306, 725, 830, 894, 993, 1514, 1633
Sau96I GGNCC 4 cut(s) 48, 230, 672, 1240
SchI GAGTC 2 cut(s) 1544, 1696
ScrFI CCNGG 2 cut(s) 1065, 1428
SduI GDGCHC 4 cut(s) 151, 413, 1307, 1656
SexAI ACCWGGT 1 cut(s) 1063
SfaNI GCATC 3 cut(s) 17, 286, 1372
SfcI CTRYAG 1 cut(s) 1258
Sfr274I CTCGAG 1 cut(s) 1686
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 3 cut(s) 230, 672, 1240
SlaI CTCGAG 1 cut(s) 1686
SmiMI CAYNNNNRTG 2 cut(s) 1298, 1581
SmlI CTYRAG 1 cut(s) 1686
SmoI CTYRAG 1 cut(s) 1686
SspI AATATT 1 cut(s) 1326
SspMI CTAG 3 cut(s) 80, 164, 1419
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 1063, 1426
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 3 cut(s) 275, 510, 1540
TatI WGTACW 1 cut(s) 819
TauI GCSGC 5 cut(s) 8, 393, 404, 760, 1673
TfiI GAWTC 2 cut(s) 362, 864
Tru1I TTAA 4 cut(s) 662, 909, 1086, 1720
Tru9I TTAA 4 cut(s) 662, 909, 1086, 1720
TseFI GTSAC 2 cut(s) 1267, 1291
TseI GCWGC 6 cut(s) 208, 211, 353, 404, 425, 1479
Tsp45I GTSAC 2 cut(s) 1267, 1291
TspDTI ATGAA 7 cut(s) 436, 455, 606, 1188, 1328, 1557, 1655
TspGWI ACGGA 3 cut(s) 270, 602, 1393
VpaK11BI GGWCC 3 cut(s) 230, 672, 1240
XapI RAATTY 4 cut(s) 803, 1017, 1175, 1251
XhoI CTCGAG 1 cut(s) 1686
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 3 cut(s) 80, 164, 1419
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.