Rmu_sc0009617.1_g000004

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009617.1
Physical Location & Seq
Forward (+)
13360 .. 16813
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009617.1_g000004.1.cds

Sequence Viewer

Length: 1692 bp
atggaacttgaatatgagcgtacattagagaaaacaccaacatgggcagtcgctgtggtctgtttggtgttgcttgtaatatcaattttcattgagcatgtcataaacttcataggaaagtggtttaaaaggagacagaagcgagctctctatgaagctcttgagaagctcaaatcagagcttatgctgttggggttcctatccttgctcctaacagttctacaagatccaatcgctggtatatgtataccgaagagtgttggagccacttggcatccttgcaatgatgacacttcagatagtaaggctagaaaacttcatgaatcctcagattctgtcttcagtttccggcgcaaattagccacaaaaggatttgataagtgcacggagaatggtaaagttgcctttgtatctgcatatgggattcaccagctccatgtatttatctttgtgctagcagtttttcatgtgctctactgcatcacaaccttggctttgggaagacacaagatgagaatatggaagtattgggagaatgagacaaaaacagttgaataccagttcagtactgatccagaaaggtttaggtatgtgagggatacatcattcggaaggaggcatttgaactcctggagccagtcaccagttttcctttggattgtgtgcttcttccgacagttcatcaggtcagttactaagactgattacctgactctgaggcatggctttatcatggcacatttagcacctgggagtgaaacgacctttgattttcggaagtacataagtagatctcttgaagatgacttcttagttattgttgagatcagtccaattatatggttctctgcagtgttgttcctgttgtctaacgcatatggatggcattcttatctctggctgccatttacctccttatttataatcctcttggtgggaactaaactacaagtgattataacaaagatggggatgaggatccaggaaggagggggtgtggtgatgggtgcaccgcttgttcaacctggtgatcactacttctggtttggacgcccccgcttcatgctcttcctcatgcactttgttttgttccagaatgcatttcagctggccttctttgcatggagtacatggcagtttggcatacagtcttgcttccaccaaaccactgaaaatatcgccatcaggatctccatgggagttatcatacaagttttatgtagttatgtgactctgccgctctatgctttagtgacacagatgggttctagtatgaaacccactgtttttaacgagggagtggcagaagcagtgaaaagttggcatcacaaagcaaaaaagaaagtaaagcacagcctgcattcagagagaaccacaccattctcaagtagacctggaactcctacacatggcatgtcaccagttcatctattgaacaatgtcaacaaccgcagtgatgaggatgacttgtttccacctccagaagcatcaatcgtcgtcgaaatggaacattcggacactgaagggtcacaaaagaacaatgttggaccgagtgaaagaggagcaattaggcaaactagtactgttagagaattaggccaaattcatgagcctccacctccaagcccctctcaggctcagcatgtagttaaaagtccgtcaagcttttcatttggtacatcaagaaagtga

Protein Analysis

563

Amino Acids

64.45

Weight (kDa)

9.26

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 923, 959
AccB7I CCANNNNNTGG 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 1240
AccI GTMKAC 2 cut(s) 247, 1390
AciI CCGC 4 cut(s) 1013, 1057, 1238, 1450
AclWI GGATC 5 cut(s) 221, 566, 973, 986, 1196
AcsI RAATTY 1 cut(s) 1602
AcuI CTGAAG 3 cut(s) 279, 325, 1542
AcyI GRCGYC 1 cut(s) 1051
AfaI GTAC 6 cut(s) 22, 568, 782, 1129, 1582, 1678
AfiI CCNNNNNNNGG 4 cut(s) 236, 934, 1409, 1633
AgsI TTSAA 6 cut(s) 11, 554, 625, 800, 1022, 1435
AhlI ACTAGT 1 cut(s) 1577
AjnI CCWGG 5 cut(s) 629, 748, 981, 1024, 1393
AluBI AGCT 7 cut(s) 146, 158, 169, 181, 433, 1108, 1665
AluI AGCT 7 cut(s) 146, 158, 169, 181, 433, 1108, 1665
Alw21I GWGCWC 4 cut(s) 148, 386, 474, 1012
Alw26I GTCTC 2 cut(s) 127, 533
Alw44I GTGCAC 2 cut(s) 382, 1008
AlwI GGATC 5 cut(s) 221, 566, 973, 986, 1196
AlwNI CAGNNNCTG 2 cut(s) 53, 335
AoxI GGCC 2 cut(s) 1110, 1597
ApaLI GTGCAC 2 cut(s) 382, 1008
ApeKI GCWGC 1 cut(s) 901
ApoI RAATTY 1 cut(s) 1602
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 1547
AsuHPI GGTGA 5 cut(s) 419, 633, 1012, 1040, 1410
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 1547
BaeGI GKGCMC 2 cut(s) 386, 1012
BamHI GGATCC 1 cut(s) 978
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 2 cut(s) 331, 508
Bbv12I GWGCWC 4 cut(s) 148, 386, 474, 1012
BbvI GCAGC 1 cut(s) 888
BccI CCATC 5 cut(s) 876, 961, 997, 1190, 1255
BciT130I CCWGG 5 cut(s) 631, 750, 983, 1026, 1395
BciVI GTATCC 1 cut(s) 592
BclI TGATCA 1 cut(s) 1030
BcoDI GTCTC 2 cut(s) 127, 533
BcuI ACTAGT 1 cut(s) 1577
BfaI CTAG 4 cut(s) 309, 455, 1269, 1578
BfmI CTRYAG 1 cut(s) 849
BfuI GTATCC 1 cut(s) 592
BglII AGATCT 1 cut(s) 791
BisI GCNGC 2 cut(s) 902, 1238
BlpI GCTNAGC 1 cut(s) 1638
BlsI GCNGC 2 cut(s) 903, 1239
BmcAI AGTACT 2 cut(s) 568, 1582
Bme1390I CCNGG 5 cut(s) 631, 750, 983, 1026, 1395
Bme18I GGWCC 1 cut(s) 1547
BmgT120I GGNCC 1 cut(s) 1547
BmiI GGNNCC 4 cut(s) 197, 265, 635, 980
BmrFI CCNGG 5 cut(s) 631, 750, 983, 1026, 1395
BmsI GCATC 4 cut(s) 283, 489, 1333, 1496
BmtI GCTAGC 1 cut(s) 458
BpiI GAAGAC 2 cut(s) 331, 508
BpmI CTGGAG 2 cut(s) 652, 1464
Bpu1102I GCTNAGC 1 cut(s) 1638
BpuEI CTTGAG 2 cut(s) 182, 1369
BsaBI GATNNNNATC 1 cut(s) 977
BsaHI GRCGYC 1 cut(s) 1051
BsaJI CCNNGG 3 cut(s) 489, 749, 1194
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 934, 1409, 1633
Bse1I ACTGG 4 cut(s) 559, 637, 644, 1421
Bse3DI GCAATG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 977
BseBI CCWGG 5 cut(s) 631, 750, 983, 1026, 1395
BseDI CCNNGG 3 cut(s) 489, 749, 1194
BseGI GGATG 4 cut(s) 274, 887, 978, 1468
BseJI GATNNNNATC 1 cut(s) 977
BseLI CCNNNNNNNGG 4 cut(s) 236, 934, 1409, 1633
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 4 cut(s) 342, 707, 1646, 1652
BseNI ACTGG 4 cut(s) 559, 637, 644, 1421
BseRI GAGGAG 1 cut(s) 1575
BseSI GKGCMC 2 cut(s) 386, 1012
BseXI GCAGC 1 cut(s) 888
BshFI GGCC 2 cut(s) 1112, 1599
BsiHKAI GWGCWC 4 cut(s) 148, 386, 474, 1012
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 4 cut(s) 236, 934, 1409, 1633
BsmAI GTCTC 2 cut(s) 127, 533
BsmI GAATGC 3 cut(s) 886, 1102, 1360
BsnI GGCC 2 cut(s) 1112, 1599
Bsp1286I GDGCHC 4 cut(s) 148, 386, 474, 1012
Bsp143I GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
Bsp1720I GCTNAGC 1 cut(s) 1638
Bsp19I CCATGG 1 cut(s) 1194
BspACI CCGC 4 cut(s) 1013, 1057, 1238, 1450
BspANI GGCC 2 cut(s) 1112, 1599
BspCNI CTCAG 4 cut(s) 341, 708, 1645, 1651
BspHI TCATGA 2 cut(s) 319, 1606
BspLI GGNNCC 4 cut(s) 197, 265, 635, 980
BspMAI CTGCAG 1 cut(s) 853
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 5 cut(s) 221, 566, 973, 986, 1196
BspQI GCTCTTC 1 cut(s) 1073
BsrBI CCGCTC 1 cut(s) 1240
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 4 cut(s) 559, 637, 644, 1421
BssECI CCNNGG 3 cut(s) 489, 749, 1194
BssMI GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
BssNAI GTATAC 1 cut(s) 248
BssNI GRCGYC 1 cut(s) 1051
BssT1I CCWWGG 2 cut(s) 489, 1194
Bst1107I GTATAC 1 cut(s) 248
Bst2UI CCWGG 5 cut(s) 631, 750, 983, 1026, 1395
Bst4CI ACNGT 6 cut(s) 217, 550, 678, 1149, 1285, 1585
Bst6I CTCTTC 2 cut(s) 248, 1073
BstACI GRCGYC 1 cut(s) 1051
BstAPI GCANNNNNTGC 1 cut(s) 1357
BstC8I GCNNGC 4 cut(s) 144, 456, 1110, 1358
BstDEI CTNAG 6 cut(s) 328, 696, 716, 811, 1632, 1638
BstDSI CCRYGG 1 cut(s) 1194
BstF5I GGATG 4 cut(s) 274, 887, 978, 1468
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 7 cut(s) 229, 574, 794, 828, 981, 1033, 1191
BstMAI GTCTC 2 cut(s) 127, 533
BstMBI GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
BstMWI GCNNNNNNNGC 3 cut(s) 743, 1118, 1357
BstNI CCWGG 5 cut(s) 631, 750, 983, 1026, 1395
BstNSI RCATGY 3 cut(s) 101, 1417, 1646
BstSCI CCNGG 5 cut(s) 629, 748, 981, 1024, 1393
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 2 cut(s) 386, 1012
BstV1I GCAGC 1 cut(s) 888
BstV2I GAAGAC 2 cut(s) 331, 508
BstX2I RGATCY 4 cut(s) 226, 791, 978, 1188
BstXI CCANNNNNNTGG 1 cut(s) 840
BstYI RGATCY 4 cut(s) 226, 791, 978, 1188
BstZ17I GTATAC 1 cut(s) 248
BsuI GTATCC 1 cut(s) 592
BsuRI GGCC 2 cut(s) 1112, 1599
BtgI CCRYGG 1 cut(s) 1194
BtsCI GGATG 4 cut(s) 274, 887, 978, 1468
BtsI GCAGTG 3 cut(s) 858, 1317, 1459
BtsIMutI CAGTG 6 cut(s) 858, 1167, 1281, 1317, 1459, 1518
Cac8I GCNNGC 4 cut(s) 144, 456, 1110, 1358
CaiI CAGNNNCTG 2 cut(s) 53, 335
CciI TCATGA 2 cut(s) 319, 1606
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 1547
CseI GACGC 1 cut(s) 1059
CsiI ACCWGGT 1 cut(s) 1024
Csp6I GTAC 6 cut(s) 21, 567, 781, 1128, 1581, 1677
CviQI GTAC 6 cut(s) 21, 567, 781, 1128, 1581, 1677
DdeI CTNAG 6 cut(s) 328, 696, 716, 811, 1632, 1638
DpnI GATC 7 cut(s) 228, 573, 793, 827, 980, 1032, 1190
DpnII GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
DraI TTTAAA 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 248, 1073
EarI CTCTTC 2 cut(s) 248, 1073
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 489, 1194
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 1547
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 3 cut(s) 279, 325, 1542
EcoICRI GAGCTC 1 cut(s) 146
EcoRII CCWGG 5 cut(s) 629, 748, 981, 1024, 1393
EcoT14I CCWWGG 2 cut(s) 489, 1194
EcoT22I ATGCAT 1 cut(s) 1102
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 2 cut(s) 489, 1194
FauI CCCGC 1 cut(s) 1064
FauNDI CATATG 2 cut(s) 418, 877
FbaI TGATCA 1 cut(s) 1030
FblI GTMKAC 2 cut(s) 247, 1390
Fnu4HI GCNGC 2 cut(s) 902, 1238
FokI GGATG 4 cut(s) 261, 894, 985, 1475
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 902, 1238
FspBI CTAG 4 cut(s) 309, 455, 1269, 1578
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 902, 1238
GsuI CTGGAG 2 cut(s) 652, 1464
HaeIII GGCC 2 cut(s) 1112, 1599
HapII CCGG 1 cut(s) 349
HgaI GACGC 1 cut(s) 1059
HhaI GCGC 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 1051
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 1 cut(s) 1444
HindII GTYRAC 1 cut(s) 1444
HindIII AAGCTT 1 cut(s) 1663
HinfI GANTC 5 cut(s) 323, 332, 424, 712, 1231
HpaII CCGG 1 cut(s) 349
HphI GGTGA 5 cut(s) 419, 633, 1012, 1040, 1410
Hpy166II GTNNAC 5 cut(s) 248, 384, 1010, 1391, 1444
Hpy188I TCNGA 9 cut(s) 178, 298, 331, 611, 674, 717, 777, 1366, 1516
Hpy188III TCNNGA 9 cut(s) 161, 320, 575, 797, 1093, 1186, 1481, 1607, 1683
Hpy8I GTNNAC 5 cut(s) 248, 384, 1010, 1391, 1444
Hpy99I CGWCG 2 cut(s) 1499, 1502
HpyAV CCTTC 4 cut(s) 606, 980, 1123, 1517
HpyCH4III ACNGT 6 cut(s) 217, 550, 678, 1149, 1285, 1585
HpyF10VI GCNNNNNNNGC 3 cut(s) 743, 1118, 1357
HpyF3I CTNAG 6 cut(s) 328, 696, 716, 811, 1632, 1638
Hsp92I GRCGYC 1 cut(s) 1051
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 1030
Kzo9I GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
LguI GCTCTTC 1 cut(s) 1073
LmnI GCTCC 5 cut(s) 213, 263, 438, 633, 1562
Lsp1109I GCAGC 1 cut(s) 888
LweI GCATC 4 cut(s) 283, 489, 1333, 1496
MabI ACCWGGT 1 cut(s) 1024
MaeI CTAG 4 cut(s) 309, 455, 1269, 1578
MaeIII GTNAC 6 cut(s) 639, 691, 1228, 1252, 1416, 1527
MalI GATC 7 cut(s) 228, 573, 793, 827, 980, 1032, 1190
MbiI CCGCTC 1 cut(s) 1240
MboI GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
MboII GAAGA 6 cut(s) 265, 331, 513, 661, 812, 1060
MflI RGATCY 4 cut(s) 226, 791, 978, 1188
MhlI GDGCHC 4 cut(s) 148, 386, 474, 1012
MluCI AATT 6 cut(s) 84, 356, 834, 1566, 1592, 1602
MlyI GAGTC 2 cut(s) 706, 1225
MmeI TCCRAC 3 cut(s) 241, 697, 1525
Mph1103I ATGCAT 1 cut(s) 1102
MseI TTAA 3 cut(s) 126, 1290, 1650
MslI CAYNNNNRTG 2 cut(s) 40, 880
MspA1I CMGCKG 1 cut(s) 1108
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 5 cut(s) 631, 750, 983, 1026, 1395
Mva1269I GAATGC 3 cut(s) 886, 1102, 1360
MvaI CCWGG 5 cut(s) 631, 750, 983, 1026, 1395
MwoI GCNNNNNNNGC 3 cut(s) 743, 1118, 1357
NcoI CCATGG 1 cut(s) 1194
NdeI CATATG 2 cut(s) 418, 877
NdeII GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
NheI GCTAGC 1 cut(s) 454
NlaIV GGNNCC 4 cut(s) 197, 265, 635, 980
NmuCI GTSAC 5 cut(s) 639, 1228, 1252, 1416, 1527
NsiI ATGCAT 1 cut(s) 1102
NspI RCATGY 3 cut(s) 101, 1417, 1646
PagI TCATGA 2 cut(s) 319, 1606
PciSI GCTCTTC 1 cut(s) 1073
PctI GAATGC 3 cut(s) 886, 1102, 1360
PfeI GAWTC 3 cut(s) 323, 332, 424
PflMI CCANNNNNTGG 1 cut(s) 236
PfoI TCCNGGA 2 cut(s) 629, 981
PkrI GCNGC 2 cut(s) 903, 1239
PleI GAGTC 2 cut(s) 706, 1225
PpsI GAGTC 2 cut(s) 706, 1225
PsiI TTATAA 2 cut(s) 923, 959
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 5 cut(s) 629, 748, 981, 1024, 1393
PspGI CCWGG 5 cut(s) 629, 748, 981, 1024, 1393
PspN4I GGNNCC 4 cut(s) 197, 265, 635, 980
PspPI GGNCC 1 cut(s) 1547
PstI CTGCAG 1 cut(s) 853
PstNI CAGNNNCTG 2 cut(s) 53, 335
PsuI RGATCY 4 cut(s) 226, 791, 978, 1188
PvuII CAGCTG 1 cut(s) 1108
RsaI GTAC 6 cut(s) 22, 568, 782, 1129, 1582, 1678
RsaNI GTAC 6 cut(s) 21, 567, 781, 1128, 1581, 1677
RseI CAYNNNNRTG 2 cut(s) 40, 880
SacI GAGCTC 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 1073
SaqAI TTAA 3 cut(s) 126, 1290, 1650
SatI GCNGC 2 cut(s) 902, 1238
Sau3AI GATC 7 cut(s) 226, 571, 791, 825, 978, 1030, 1188
Sau96I GGNCC 1 cut(s) 1547
ScaI AGTACT 2 cut(s) 568, 1582
SchI GAGTC 2 cut(s) 706, 1225
ScrFI CCNGG 5 cut(s) 631, 750, 983, 1026, 1395
SduI GDGCHC 4 cut(s) 148, 386, 474, 1012
SexAI ACCWGGT 1 cut(s) 1024
SfaNI GCATC 4 cut(s) 283, 489, 1333, 1496
SfcI CTRYAG 1 cut(s) 849
SinI GGWCC 1 cut(s) 1547
SmiMI CAYNNNNRTG 2 cut(s) 40, 880
SmlI CTYRAG 2 cut(s) 161, 1384
SmoI CTYRAG 2 cut(s) 161, 1384
SpeI ACTAGT 1 cut(s) 1577
Sse9I AATT 6 cut(s) 84, 356, 834, 1566, 1592, 1602
SsiI CCGC 4 cut(s) 1013, 1057, 1238, 1450
SspMI CTAG 4 cut(s) 309, 455, 1269, 1578
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 5 cut(s) 629, 748, 981, 1024, 1393
StyI CCWWGG 2 cut(s) 489, 1194
TaaI ACNGT 6 cut(s) 217, 550, 678, 1149, 1285, 1585
TaqI TCGA 1 cut(s) 1500
TaqII GACCGA 1 cut(s) 1564
TasI AATT 6 cut(s) 84, 356, 834, 1566, 1592, 1602
TatI WGTACW 4 cut(s) 566, 780, 1127, 1580
TauI GCSGC 1 cut(s) 1240
TfiI GAWTC 3 cut(s) 323, 332, 424
Tru1I TTAA 3 cut(s) 126, 1290, 1650
Tru9I TTAA 3 cut(s) 126, 1290, 1650
TscAI CASTG 6 cut(s) 858, 1174, 1288, 1317, 1459, 1525
TseFI GTSAC 5 cut(s) 639, 1228, 1252, 1416, 1527
TseI GCWGC 1 cut(s) 901
Tsp45I GTSAC 5 cut(s) 639, 1228, 1252, 1416, 1527
TspGWI ACGGA 2 cut(s) 401, 1647
TspRI CASTG 6 cut(s) 858, 1174, 1288, 1317, 1459, 1525
Van91I CCANNNNNTGG 1 cut(s) 236
VneI GTGCAC 2 cut(s) 382, 1008
VpaK11BI GGWCC 1 cut(s) 1547
XapI RAATTY 1 cut(s) 1602
XceI RCATGY 3 cut(s) 101, 1417, 1646
XcmI CCANNNNNNNNNTGG 1 cut(s) 651
XmiI GTMKAC 2 cut(s) 247, 1390
XspI CTAG 4 cut(s) 309, 455, 1269, 1578
ZrmI AGTACT 2 cut(s) 568, 1582
Zsp2I ATGCAT 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.