Rh1DG312400

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
53916602 .. 53925512
8911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG312400.1

Sequence Viewer

Length: 1269 bp
ATGAAACTTGAATATGAGCGTACATTAGAGAAAACACCAACATGGGCAGTTGCTGTGGTCTGTTTTGTGTTGCTTGTAATATCAATTTTCATTGAGCATGTCATAAACTTCATAGGAAAGTGGTTTAAAAGTAGACACAAGCGAGCTCTCTATGAAGCTCTTGAGAAGCTCAAATCAGAGCTTATGCTGTTGGGATTCCTGTCCTTGCTCCTAACAGTTCTACAAGATCCAATCGCTGGTATATGTATACCGAAGAGTGTTGCAGCCACTTGGCATCCTTGCAATGATGCCACTCCAGTTAGTAAGGCTAGAAAACTTCATGAATCCTCAGATTCTGTCTTCAGTTTCCGGCGCAAATTAGCCACAAAAGGATATGATAAGTGCACGAAGAATGGTAAAGTTGCCTTTGTATCTGCATATGGGATTCACCAGCTCCATGTATTTATCTTTGTGCTAGCAGTTTTTCATGTGCTCTACTGCATCACAACCTTGGCTTTGGGAAGACACAAGATAATCCTCTTGGTGGGAACTAAACTACAAGTGATTATAACCAAGATGGGGATGAGGATCCAGGAAAGAGGGGGTGTGGTGATGGGTGCACCGCTTGTTCAACCTGGTGATCACTACTTCTGGTTTGGACGCCCCCGCTTCATGCTCTTCCTCATCCACTTTAATGCATTTCAGCTGGCCTTCTTTGTATGGAGTACATGGCAGTTTACCATACAGTCTTGCTTCCACCCAACCCCTGAAAATATCGCCATCAGGATCTCAATGGGGGTTATCATACAAGTTTTATGTAGTTATGTGACTCTGCCACTCTATGCTTTAGTGACACAGATGGGTTCTAGTATGAAACCCACTGTTTTTAATGAGGGAGTGGCAGAAGCAGTGAAAAGTTGGCATCACAAAGCAAAAAAGAAAGTAAAGCACAGCCTGCATTCAGAGAGAACCACACCATTCTCAAGTAGACCTGGAACTCCTACACATGGCATGTCACCAGTTCATCTATTGCAGAATGTCAACAACCGCAGCGATGAGGATGACTTGTTTCCACCTCCAGAAGCATCAATAGTCGTTGAAATGGAACATTTGGACACTGAAGGGTCACAAAAGAACAATGTTGGACCGAGTGAAAGAGGAGCAATTAGGCAAACTAGTACTGTTAGAGAATTAGGCCAAATTCATGAGCCTCCAGCTCCAAGCCCCTCTCAGGCTCAGCATGTAGTTAAAAGTCCGTCAAGCTTCTCATTTGGTACATCAAGAAAGTGA

Protein Analysis

422

Amino Acids

47.41

Weight (kDa)

9.6

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 6 - 171 4.8e-70 Mlo family
Mlo PF03094 171 - 340 7e-77 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 3 cut(s) 133, 247, 967
AciI CCGC 3 cut(s) 602, 646, 1027
AclWI GGATC 4 cut(s) 221, 562, 575, 773
AcsI RAATTY 1 cut(s) 1179
AcuI CTGAAG 2 cut(s) 325, 1119
AcyI GRCGYC 1 cut(s) 640
AfaI GTAC 4 cut(s) 22, 706, 1159, 1255
AfiI CCNNNNNNNGG 5 cut(s) 236, 523, 558, 986, 1210
AgsI TTSAA 3 cut(s) 11, 611, 1079
AhlI ACTAGT 1 cut(s) 1154
AjnI CCWGG 3 cut(s) 570, 613, 970
AluBI AGCT 8 cut(s) 146, 158, 169, 181, 433, 685, 1196, 1242
AluI AGCT 8 cut(s) 146, 158, 169, 181, 433, 685, 1196, 1242
Alw21I GWGCWC 4 cut(s) 148, 386, 474, 601
Alw44I GTGCAC 2 cut(s) 382, 597
AlwI GGATC 4 cut(s) 221, 562, 575, 773
AlwNI CAGNNNCTG 2 cut(s) 53, 335
AoxI GGCC 2 cut(s) 687, 1174
ApaLI GTGCAC 2 cut(s) 382, 597
ApeKI GCWGC 2 cut(s) 263, 1029
ApoI RAATTY 1 cut(s) 1179
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 1124
AsuHPI GGTGA 4 cut(s) 419, 601, 629, 987
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 1124
BaeGI GKGCMC 2 cut(s) 386, 601
BamHI GGATCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 2 cut(s) 331, 508
Bbv12I GWGCWC 4 cut(s) 148, 386, 474, 601
BbvI GCAGC 2 cut(s) 275, 1041
BccI CCATC 4 cut(s) 550, 586, 767, 832
BciT130I CCWGG 3 cut(s) 572, 615, 972
BclI TGATCA 1 cut(s) 619
BcuI ACTAGT 1 cut(s) 1154
BfaI CTAG 4 cut(s) 309, 455, 846, 1155
BisI GCNGC 2 cut(s) 264, 1030
BlpI GCTNAGC 1 cut(s) 1215
BlsI GCNGC 2 cut(s) 265, 1031
BmcAI AGTACT 1 cut(s) 1159
Bme1390I CCNGG 3 cut(s) 572, 615, 972
Bme18I GGWCC 1 cut(s) 1124
BmgT120I GGNCC 1 cut(s) 1124
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 3 cut(s) 572, 615, 972
BmsI GCATC 5 cut(s) 277, 283, 489, 910, 1073
BmtI GCTAGC 1 cut(s) 458
BpiI GAAGAC 2 cut(s) 331, 508
BpmI CTGGAG 3 cut(s) 279, 1041, 1176
Bpu1102I GCTNAGC 1 cut(s) 1215
BpuEI CTTGAG 2 cut(s) 182, 946
BsaBI GATNNNNATC 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 5 cut(s) 236, 523, 558, 986, 1210
Bse1I ACTGG 2 cut(s) 296, 998
Bse3DI GCAATG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 3 cut(s) 572, 615, 972
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 4 cut(s) 274, 567, 663, 1045
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 5 cut(s) 236, 523, 558, 986, 1210
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 3 cut(s) 342, 1223, 1229
BseNI ACTGG 2 cut(s) 296, 998
BseRI GAGGAG 1 cut(s) 1152
BseSI GKGCMC 2 cut(s) 386, 601
BseXI GCAGC 2 cut(s) 275, 1041
BshFI GGCC 2 cut(s) 689, 1176
BsiHKAI GWGCWC 4 cut(s) 148, 386, 474, 601
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 5 cut(s) 236, 523, 558, 986, 1210
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 2 cut(s) 689, 1176
Bsp1286I GDGCHC 4 cut(s) 148, 386, 474, 601
Bsp143I GATC 4 cut(s) 226, 567, 619, 765
Bsp1720I GCTNAGC 1 cut(s) 1215
BspACI CCGC 3 cut(s) 602, 646, 1027
BspANI GGCC 2 cut(s) 689, 1176
BspCNI CTCAG 3 cut(s) 341, 1222, 1228
BspHI TCATGA 2 cut(s) 319, 1183
BspLI GGNNCC 1 cut(s) 569
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 4 cut(s) 221, 562, 575, 773
BspQI GCTCTTC 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 2 cut(s) 296, 998
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 4 cut(s) 226, 567, 619, 765
BssNAI GTATAC 1 cut(s) 248
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 489
Bst1107I GTATAC 1 cut(s) 248
Bst2UI CCWGG 3 cut(s) 572, 615, 972
Bst4CI ACNGT 4 cut(s) 217, 726, 862, 1162
Bst6I CTCTTC 2 cut(s) 248, 662
BstACI GRCGYC 1 cut(s) 640
BstAPI GCANNNNNTGC 1 cut(s) 934
BstC8I GCNNGC 4 cut(s) 144, 456, 687, 935
BstDEI CTNAG 3 cut(s) 328, 1209, 1215
BstF5I GGATG 4 cut(s) 274, 567, 663, 1045
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 4 cut(s) 229, 570, 622, 768
BstMBI GATC 4 cut(s) 226, 567, 619, 765
BstMWI GCNNNNNNNGC 1 cut(s) 934
BstNI CCWGG 3 cut(s) 572, 615, 972
BstNSI RCATGY 3 cut(s) 101, 994, 1223
BstSCI CCNGG 3 cut(s) 570, 613, 970
BstSLI GKGCMC 2 cut(s) 386, 601
BstV1I GCAGC 2 cut(s) 275, 1041
BstV2I GAAGAC 2 cut(s) 331, 508
BstX2I RGATCY 3 cut(s) 226, 567, 765
BstYI RGATCY 3 cut(s) 226, 567, 765
BstZ17I GTATAC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 689, 1176
BtgZI GCGATG 1 cut(s) 1047
BtsCI GGATG 4 cut(s) 274, 567, 663, 1045
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 3 cut(s) 858, 894, 1095
Cac8I GCNNGC 4 cut(s) 144, 456, 687, 935
CaiI CAGNNNCTG 2 cut(s) 53, 335
CciI TCATGA 2 cut(s) 319, 1183
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 1124
CseI GACGC 1 cut(s) 648
CsiI ACCWGGT 1 cut(s) 613
Csp6I GTAC 4 cut(s) 21, 705, 1158, 1254
CviQI GTAC 4 cut(s) 21, 705, 1158, 1254
DdeI CTNAG 3 cut(s) 328, 1209, 1215
DpnI GATC 4 cut(s) 228, 569, 621, 767
DpnII GATC 4 cut(s) 226, 567, 619, 765
DraI TTTAAA 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 248, 662
EarI CTCTTC 2 cut(s) 248, 662
Ecl136II GAGCTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 1124
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 325, 1119
EcoICRI GAGCTC 1 cut(s) 146
EcoRII CCWGG 3 cut(s) 570, 613, 970
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 489
FauI CCCGC 1 cut(s) 653
FauNDI CATATG 1 cut(s) 418
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 3 cut(s) 133, 247, 967
Fnu4HI GCNGC 2 cut(s) 264, 1030
FokI GGATG 4 cut(s) 261, 574, 650, 1052
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 2 cut(s) 264, 1030
FspBI CTAG 4 cut(s) 309, 455, 846, 1155
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 264, 1030
GsuI CTGGAG 3 cut(s) 279, 1041, 1176
HaeIII GGCC 2 cut(s) 689, 1176
HapII CCGG 1 cut(s) 349
HgaI GACGC 1 cut(s) 648
HhaI GCGC 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 640
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HindIII AAGCTT 1 cut(s) 1240
HinfI GANTC 5 cut(s) 195, 323, 332, 424, 808
HpaII CCGG 1 cut(s) 349
HphI GGTGA 4 cut(s) 419, 601, 629, 987
Hpy166II GTNNAC 7 cut(s) 134, 248, 384, 599, 717, 968, 1021
Hpy188I TCNGA 3 cut(s) 178, 331, 943
Hpy188III TCNNGA 6 cut(s) 161, 320, 763, 1058, 1184, 1260
Hpy8I GTNNAC 7 cut(s) 134, 248, 384, 599, 717, 968, 1021
HpyAV CCTTC 2 cut(s) 700, 1094
HpyCH4III ACNGT 4 cut(s) 217, 726, 862, 1162
HpyCH4V TGCA 9 cut(s) 263, 282, 384, 416, 480, 599, 677, 937, 1012
HpyF10VI GCNNNNNNNGC 1 cut(s) 934
HpyF3I CTNAG 3 cut(s) 328, 1209, 1215
Hsp92I GRCGYC 1 cut(s) 640
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 4 cut(s) 226, 567, 619, 765
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 4 cut(s) 213, 438, 1139, 1201
Lsp1109I GCAGC 2 cut(s) 275, 1041
LweI GCATC 5 cut(s) 277, 283, 489, 910, 1073
MabI ACCWGGT 1 cut(s) 613
MaeI CTAG 4 cut(s) 309, 455, 846, 1155
MaeIII GTNAC 4 cut(s) 805, 829, 993, 1104
MalI GATC 4 cut(s) 228, 569, 621, 767
MboI GATC 4 cut(s) 226, 567, 619, 765
MboII GAAGA 5 cut(s) 265, 331, 400, 513, 649
MflI RGATCY 3 cut(s) 226, 567, 765
MhlI GDGCHC 4 cut(s) 148, 386, 474, 601
MluCI AATT 5 cut(s) 84, 356, 1143, 1169, 1179
MlyI GAGTC 1 cut(s) 802
MmeI TCCRAC 1 cut(s) 1102
Mph1103I ATGCAT 1 cut(s) 679
MseI TTAA 4 cut(s) 126, 672, 867, 1227
MslI CAYNNNNRTG 2 cut(s) 40, 672
MspA1I CMGCKG 1 cut(s) 685
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 3 cut(s) 572, 615, 972
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 3 cut(s) 572, 615, 972
MwoI GCNNNNNNNGC 1 cut(s) 934
NdeI CATATG 1 cut(s) 418
NdeII GATC 4 cut(s) 226, 567, 619, 765
NheI GCTAGC 1 cut(s) 454
NlaIV GGNNCC 1 cut(s) 569
NmuCI GTSAC 4 cut(s) 805, 829, 993, 1104
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 3 cut(s) 101, 994, 1223
PagI TCATGA 2 cut(s) 319, 1183
PciSI GCTCTTC 1 cut(s) 662
PctI GAATGC 1 cut(s) 937
PfeI GAWTC 4 cut(s) 195, 323, 332, 424
PflMI CCANNNNNTGG 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 2 cut(s) 265, 1031
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
PsiI TTATAA 1 cut(s) 548
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 3 cut(s) 570, 613, 970
PspGI CCWGG 3 cut(s) 570, 613, 970
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 1 cut(s) 1124
PstNI CAGNNNCTG 2 cut(s) 53, 335
PsuI RGATCY 3 cut(s) 226, 567, 765
PvuII CAGCTG 1 cut(s) 685
RsaI GTAC 4 cut(s) 22, 706, 1159, 1255
RsaNI GTAC 4 cut(s) 21, 705, 1158, 1254
RseI CAYNNNNRTG 2 cut(s) 40, 672
SacI GAGCTC 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 4 cut(s) 126, 672, 867, 1227
SatI GCNGC 2 cut(s) 264, 1030
Sau3AI GATC 4 cut(s) 226, 567, 619, 765
Sau96I GGNCC 1 cut(s) 1124
ScaI AGTACT 1 cut(s) 1159
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 3 cut(s) 572, 615, 972
SduI GDGCHC 4 cut(s) 148, 386, 474, 601
SexAI ACCWGGT 1 cut(s) 613
SfaNI GCATC 5 cut(s) 277, 283, 489, 910, 1073
SinI GGWCC 1 cut(s) 1124
SmiMI CAYNNNNRTG 2 cut(s) 40, 672
SmlI CTYRAG 2 cut(s) 161, 961
SmoI CTYRAG 2 cut(s) 161, 961
SpeI ACTAGT 1 cut(s) 1154
Sse9I AATT 5 cut(s) 84, 356, 1143, 1169, 1179
SsiI CCGC 3 cut(s) 602, 646, 1027
SspMI CTAG 4 cut(s) 309, 455, 846, 1155
SstI GAGCTC 1 cut(s) 148
StyD4I CCNGG 3 cut(s) 570, 613, 970
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 4 cut(s) 217, 726, 862, 1162
TaqII GACCGA 1 cut(s) 1141
TasI AATT 5 cut(s) 84, 356, 1143, 1169, 1179
TatI WGTACW 2 cut(s) 704, 1157
TfiI GAWTC 4 cut(s) 195, 323, 332, 424
Tru1I TTAA 4 cut(s) 126, 672, 867, 1227
Tru9I TTAA 4 cut(s) 126, 672, 867, 1227
TscAI CASTG 3 cut(s) 865, 894, 1102
TseFI GTSAC 4 cut(s) 805, 829, 993, 1104
TseI GCWGC 2 cut(s) 263, 1029
Tsp45I GTSAC 4 cut(s) 805, 829, 993, 1104
TspGWI ACGGA 1 cut(s) 1224
TspRI CASTG 3 cut(s) 865, 894, 1102
Van91I CCANNNNNTGG 1 cut(s) 236
VneI GTGCAC 2 cut(s) 382, 597
VpaK11BI GGWCC 1 cut(s) 1124
XapI RAATTY 1 cut(s) 1179
XceI RCATGY 3 cut(s) 101, 994, 1223
XmiI GTMKAC 3 cut(s) 133, 247, 967
XspI CTAG 4 cut(s) 309, 455, 846, 1155
ZrmI AGTACT 1 cut(s) 1159
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.