Rroxscaffold_4G00292990

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
13240273 .. 13243986
3714 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00292990.1

Sequence Viewer

Length: 336 bp
ATGGGTGCCCCGCTTGTTCAACCAGACCTGGAACTCCAACACATATATGGCATGTCACCATTTCATCTATTGCCCAATGACAACAACCACAGCGAAGTGGATGACTTATTTCCACCTCTAGAAGCATCAGTAGTTGTCGAAATGGAACATTGGGAGACTGAAGGGTCACATTCCCCAAAGAACAATGTTGGACTGAGTGAAAGAGGAGCAATTAGGCAAACTAGTACTGTTAGAGAATTAGGCCACATTCAAGAGCCTCCACCTCCACGCCCTTTTCAGGCTCAGCATAAAGTTATTAGTCCGTTGAGCTTCTCATTTGCAAAATCAAGAAAGTGA

Protein Analysis

111

Amino Acids

12.44

Weight (kDa)

5.73

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 2 cut(s) 20, 251
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 48
BaeGI GKGCMC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 2 cut(s) 119, 222
BlpI GCTNAGC 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 134
Bpu1102I GCTNAGC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 185, 296
BseRI GAGGAG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 10
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 282
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 186, 295
BspLI GGNNCC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 194, 282
BstF5I GGATG 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 106
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 52
CviJI RGCY 4 cut(s) 243, 256, 281, 309
CviKI_1 RGCY 4 cut(s) 243, 256, 281, 309
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 2 cut(s) 194, 282
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 55
FaiI YATR 5 cut(s) 44, 46, 48, 53, 288
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 18
FokI GGATG 1 cut(s) 113
FspBI CTAG 2 cut(s) 119, 222
HaeIII GGCC 1 cut(s) 243
Hin1II CATG 1 cut(s) 55
HphI GGTGA 1 cut(s) 48
Hpy188III TCNNGA 3 cut(s) 119, 251, 327
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 320
HpyF3I CTNAG 2 cut(s) 194, 282
Hsp92II CATG 1 cut(s) 55
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 14, 36, 41, 263
LweI GCATC 1 cut(s) 134
MaeI CTAG 2 cut(s) 119, 222
MaeIII GTNAC 2 cut(s) 54, 165
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 210, 236
MmeI TCCRAC 2 cut(s) 61, 169
MnlI CCTC 4 cut(s) 126, 197, 267, 273
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 54, 165
NspI RCATGY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 45
ScaI AGTACT 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 10
SetI ASST 4 cut(s) 30, 118, 265, 311
SfaNI GCATC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 45
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 2 cut(s) 210, 236
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 119, 222
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 210, 236
TatI WGTACW 1 cut(s) 224
TseFI GTSAC 2 cut(s) 54, 165
Tsp45I GTSAC 2 cut(s) 54, 165
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 291
XbaI TCTAGA 1 cut(s) 118
XceI RCATGY 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XspI CTAG 2 cut(s) 119, 222
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.