Rh1DG312200

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
53908907 .. 53909303
397 bp
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UTR
Exon/CDS
Intron
Rh1DG312200.1

Sequence Viewer

Length: 288 bp
ATGTCACCATTTCATCTATTGCACAACGACAACAACCGCAGCGAAGTGGATGACTTATTTCCACCTCCAGAAGCATCAGTAGTTGTCGAAATGGAACATTGGGACACTGAAGGGTCACATTCCCCAAAGAACAATGTTGGACCGAGTGAAAGAGGAGCAATTATTAGGCAAACTAGTACTGTTAGAGAATTAGGCCACATTCAAGAGCCTCCACCTCCACGCCCTTTTCAGGCTCAGCATAAAGTTATTAGTCCGTCGAGCTTCTCATTTGCAAAATCAAGAAAGTGA

Protein Analysis

95

Amino Acids

10.68

Weight (kDa)

6.28

Isoelectric Point (pI)

74.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 203
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 140
AvaII GGWCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 51
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 41
BmcAI AGTACT 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmsI GCATC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 1 cut(s) 195
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 195
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 51
BsuRI GGCC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 177
CviJI RGCY 4 cut(s) 195, 208, 233, 261
CviKI_1 RGCY 4 cut(s) 195, 208, 233, 261
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 129
FaiI YATR 1 cut(s) 240
FaqI GGGAC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 195
Hpy188III TCNNGA 3 cut(s) 68, 203, 279
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 22, 272
HpyF3I CTNAG 1 cut(s) 234
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 2 cut(s) 81, 215
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 83
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 3, 114
MluCI AATT 2 cut(s) 159, 188
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 4 cut(s) 75, 146, 219, 225
NmuCI GTSAC 2 cut(s) 3, 114
PkrI GCNGC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 140
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SatI GCNGC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 178
SetI ASST 3 cut(s) 67, 217, 263
SfaNI GCATC 1 cut(s) 83
SgeI CNNG 7 cut(s) 80, 156, 186, 215, 231, 242, 270
SinI GGWCC 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 2 cut(s) 159, 188
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 87, 257
TaqII GACCGA 1 cut(s) 157
TasI AATT 2 cut(s) 159, 188
TatI WGTACW 1 cut(s) 176
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 3, 114
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 2 cut(s) 3, 114
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 140
XspI CTAG 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.