Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Forward (+)

12600261 .. 12601440

Gene Structure 1180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGGATGAGGATCCAGGAAGGAGGGGGTGTGGTGATGGGTGGACCGCTTGTTCAACCTGGTGATCACTACTTCTGGTTTGGATGCCCCCGCTTCTTGCTCTTCCTCATCCACTTTGTTTTGTTCCAGAATGCATTTCAGCTGGCCTTCTTTGCATGGAGTACATGGCAGTTTGGCATACAGTCATGCTTCCACCAAACCCCTGATAATATCGCCATCAGGATCTCCATGGGGGTTATCGTACAAGTTTTATGTAGTTATGTGACTCTGCCGCTCTATGCTTTAGTGACACAGATGGGTTCTAGTATGAAACCCACTGTTTTTAACGAGGGAGTGGCAGAAGCAGTGAAAAGTTGGCATCACAAAGCAAAAAAGAAAGTAAAGCACAGCCTGCATTCAGAGAGGACCACACCATTCTCAAGTAGACCTGGAACTCCTACACATGGCATGTCACCAGTTCATCTATTGCACAATGTCAACAACCGCAGCGATGAGGATTACTTGTTTCCACCTCCAGAAGCATCAATGGTCGTCGAAATGGAACATTTGGACACTGAAGGGTCACAAAAGAACAATGTTGGACCGAGTGAAAGAGGAGCAATTAGGCAAACTAGTACTGTTAGAGAATTAGGCCAAATTCATGAGCCTCCACCTCCAGGCCCCTCTCAAGCTCAGCATGTAGTTAAAAGTCCGTCAAGCTTCTCATTTGGTACATCAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

242

Amino Acids

26.81

Weight (kDa)

8.81

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	1 - 159	7.9e-73	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	4 cut(s)	47, 91, 272, 484
AclWI	GGATC	3 cut(s)	7, 20, 230
AcsI	RAATTY	1 cut(s)	636
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	4 cut(s)	163, 243, 616, 712
AfiI	CCNNNNNNNGG	2 cut(s)	443, 656
AgsI	TTSAA	1 cut(s)	56
AhlI	ACTAGT	1 cut(s)	611
AjnI	CCWGG	4 cut(s)	15, 58, 427, 655
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
AluBI	AGCT	3 cut(s)	142, 671, 699
AluI	AGCT	3 cut(s)	142, 671, 699
AlwI	GGATC	3 cut(s)	7, 20, 230
AoxI	GGCC	3 cut(s)	144, 631, 658
ApeKI	GCWGC	1 cut(s)	486
ApoI	RAATTY	1 cut(s)	636
AspS9I	GGNCC	4 cut(s)	44, 405, 581, 659
AsuHPI	GGTGA	3 cut(s)	46, 74, 444
AvaII	GGWCC	3 cut(s)	44, 405, 581
BamHI	GGATCC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	3 cut(s)	31, 224, 289
BciT130I	CCWGG	4 cut(s)	17, 60, 429, 657
BclI	TGATCA	1 cut(s)	64
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	2 cut(s)	303, 612
BisI	GCNGC	2 cut(s)	272, 487
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	2 cut(s)	273, 488
BmcAI	AGTACT	1 cut(s)	616
Bme1390I	CCNGG	4 cut(s)	17, 60, 429, 657
Bme18I	GGWCC	3 cut(s)	44, 405, 581
BmgT120I	GGNCC	4 cut(s)	44, 405, 581, 659
BmiI	GGNNCC	2 cut(s)	14, 661
BmrFI	CCNGG	4 cut(s)	17, 60, 429, 657
BmsI	GCATC	3 cut(s)	74, 367, 530
BpmI	CTGGAG	2 cut(s)	498, 639
Bpu1102I	GCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	2 cut(s)	403, 651
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 656
Bse1I	ACTGG	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	4 cut(s)	17, 60, 429, 657
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	12, 89, 108
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	443, 656
BseMII	CTCAG	1 cut(s)	686
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	498
BshFI	GGCC	3 cut(s)	146, 633, 660
BslI	CCNNNNNNNGG	2 cut(s)	443, 656
BsmI	GAATGC	2 cut(s)	136, 394
BsnI	GGCC	3 cut(s)	146, 633, 660
Bsp143I	GATC	3 cut(s)	12, 64, 222
Bsp1720I	GCTNAGC	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	4 cut(s)	47, 91, 272, 484
BspANI	GGCC	3 cut(s)	146, 633, 660
BspCNI	CTCAG	1 cut(s)	685
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	14, 661
BspPI	GGATC	3 cut(s)	7, 20, 230
BspQI	GCTCTTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	3 cut(s)	12, 64, 222
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	4 cut(s)	17, 60, 429, 657
Bst4CI	ACNGT	3 cut(s)	183, 319, 619
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	144, 392
BstDEI	CTNAG	1 cut(s)	672
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	12, 89, 108
BstKTI	GATC	3 cut(s)	15, 67, 225
BstMBI	GATC	3 cut(s)	12, 64, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 391
BstNI	CCWGG	4 cut(s)	17, 60, 429, 657
BstNSI	RCATGY	2 cut(s)	451, 680
BstSCI	CCNGG	4 cut(s)	15, 58, 427, 655
BstV1I	GCAGC	1 cut(s)	498
BstX2I	RGATCY	2 cut(s)	12, 222
BstYI	RGATCY	2 cut(s)	12, 222
BsuRI	GGCC	3 cut(s)	146, 633, 660
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	12, 89, 108
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	315, 351, 552
Cac8I	GCNNGC	2 cut(s)	144, 392
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	4 cut(s)	44, 405, 581, 659
CsiI	ACCWGGT	1 cut(s)	58
Csp6I	GTAC	4 cut(s)	162, 242, 615, 711
CviAII	CATG	8 cut(s)	156, 165, 186, 229, 443, 448, 641, 677
CviJI	RGCY	8 cut(s)	142, 146, 390, 633, 646, 660, 671, 699
CviKI_1	RGCY	8 cut(s)	142, 146, 390, 633, 646, 660, 671, 699
CviQI	GTAC	4 cut(s)	162, 242, 615, 711
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	3 cut(s)	14, 66, 224
DpnII	GATC	3 cut(s)	12, 64, 222
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	3 cut(s)	44, 405, 581
Eco57I	CTGAAG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	4 cut(s)	15, 58, 427, 655
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	8 cut(s)	159, 168, 189, 232, 446, 451, 644, 680
FatI	CATG	8 cut(s)	155, 164, 185, 228, 442, 447, 640, 676
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	272, 487
FokI	GGATG	3 cut(s)	19, 95, 96
Fsp4HI	GCNGC	2 cut(s)	272, 487
FspBI	CTAG	2 cut(s)	303, 612
GluI	GCNGC	2 cut(s)	272, 487
GsuI	CTGGAG	2 cut(s)	498, 639
HaeIII	GGCC	3 cut(s)	146, 633, 660
Hin1II	CATG	8 cut(s)	159, 168, 189, 232, 446, 451, 644, 680
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	697
HinfI	GANTC	1 cut(s)	265
HphI	GGTGA	3 cut(s)	46, 74, 444
Hpy166II	GTNNAC	3 cut(s)	44, 425, 478
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	5 cut(s)	127, 220, 515, 641, 717
Hpy8I	GTNNAC	3 cut(s)	44, 425, 478
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	14, 157, 551
HpyCH4III	ACNGT	3 cut(s)	183, 319, 619
HpyCH4V	TGCA	4 cut(s)	134, 155, 394, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 391
HpyF3I	CTNAG	1 cut(s)	672
Hsp92II	CATG	8 cut(s)	159, 168, 189, 232, 446, 451, 644, 680
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	12, 64, 222
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	3 cut(s)	74, 367, 530
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	2 cut(s)	303, 612
MaeIII	GTNAC	4 cut(s)	262, 286, 450, 561
MalI	GATC	3 cut(s)	14, 66, 224
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	3 cut(s)	12, 64, 222
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	2 cut(s)	12, 222
MluCI	AATT	3 cut(s)	600, 626, 636
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	559
Mph1103I	ATGCAT	1 cut(s)	136
MseI	TTAA	2 cut(s)	324, 684
MspA1I	CMGCKG	1 cut(s)	142
MspR9I	CCNGG	4 cut(s)	17, 60, 429, 657
Mva1269I	GAATGC	2 cut(s)	136, 394
MvaI	CCWGG	4 cut(s)	17, 60, 429, 657
MwoI	GCNNNNNNNGC	2 cut(s)	152, 391
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	12, 64, 222
NlaIII	CATG	8 cut(s)	159, 168, 189, 232, 446, 451, 644, 680
NlaIV	GGNNCC	2 cut(s)	14, 661
NmuCI	GTSAC	4 cut(s)	262, 286, 450, 561
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	451, 680
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	2 cut(s)	136, 394
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	273, 488
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	4 cut(s)	15, 58, 427, 655
PspGI	CCWGG	4 cut(s)	15, 58, 427, 655
PspN4I	GGNNCC	2 cut(s)	14, 661
PspPI	GGNCC	4 cut(s)	44, 405, 581, 659
PsuI	RGATCY	2 cut(s)	12, 222
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	4 cut(s)	163, 243, 616, 712
RsaNI	GTAC	4 cut(s)	162, 242, 615, 711
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	324, 684
SatI	GCNGC	2 cut(s)	272, 487
Sau3AI	GATC	3 cut(s)	12, 64, 222
Sau96I	GGNCC	4 cut(s)	44, 405, 581, 659
ScaI	AGTACT	1 cut(s)	616
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	4 cut(s)	17, 60, 429, 657
SetI	ASST	7 cut(s)	61, 144, 430, 514, 655, 673, 701
SexAI	ACCWGGT	1 cut(s)	58
SfaNI	GCATC	3 cut(s)	74, 367, 530
SinI	GGWCC	3 cut(s)	44, 405, 581
SmlI	CTYRAG	2 cut(s)	418, 666
SmoI	CTYRAG	2 cut(s)	418, 666
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	3 cut(s)	600, 626, 636
SsiI	CCGC	4 cut(s)	47, 91, 272, 484
SspMI	CTAG	2 cut(s)	303, 612
StyD4I	CCNGG	4 cut(s)	15, 58, 427, 655
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	183, 319, 619
TaqI	TCGA	1 cut(s)	534
TaqII	GACCGA	1 cut(s)	598
TasI	AATT	3 cut(s)	600, 626, 636
TatI	WGTACW	2 cut(s)	161, 614
TauI	GCSGC	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	324, 684
Tru9I	TTAA	2 cut(s)	324, 684
TscAI	CASTG	3 cut(s)	322, 351, 559
TseFI	GTSAC	4 cut(s)	262, 286, 450, 561
TseI	GCWGC	1 cut(s)	486
Tsp45I	GTSAC	4 cut(s)	262, 286, 450, 561
TspDTI	ATGAA	3 cut(s)	323, 449, 629
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	3 cut(s)	322, 351, 559
VpaK11BI	GGWCC	3 cut(s)	44, 405, 581
XapI	RAATTY	1 cut(s)	636
XceI	RCATGY	2 cut(s)	451, 680
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	2 cut(s)	303, 612
ZrmI	AGTACT	1 cut(s)	616
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.