Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Reverse (-)

39254789 .. 39255637

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0326600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTACACTGATAAGTTCATAGCCCCTTTGCCTAAAGCTGAAGGCACTGATTTCCAAACCCAAATGGGAAGTCAAATTATGATCATTGCAACAAAACTAGTGGATTTTCCATTAAAGGCCACAAGGACTTTTATGGATATAGGTGAATTTGGGTTTGAGAGATCAGCTGACGCTCTTCAGCCATTAATTGATTGTCCCGGAAATGCTGAATATGTAGATGGGTTTATGGCTGGGGCTGATGGGGAGGTACAGAAGGTACCAAGGGCTATTTGCATTTTTGAATTGTACTCAGGTGATGTTACAATGAGACATACTGAAATTAATGTACCTAGCAAATTGATGAGAAGTGGGCAGCAGGAGAAGACTCTAGTGGTTAGAATGGAGGCTACTGTGGGTAACTATGATTATGTTATTGATTGGGAATTCAAGCAAAGTGGCACCACTAAAGTTGGGGGTAACCAGAGAAGTATATCAAAACCAATTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0016020 GO:0043207 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

162

Amino Acids

18.04

Weight (kDa)

5.19

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	39 - 150	6.8e-32	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	2 cut(s)	256, 437
AcsI	RAATTY	2 cut(s)	146, 422
AcuI	CTGAAG	2 cut(s)	60, 161
AfaI	GTAC	5 cut(s)	5, 249, 258, 287, 327
AgsI	TTSAA	2 cut(s)	281, 427
AhlI	ACTAGT	1 cut(s)	97
AluBI	AGCT	2 cut(s)	38, 167
AluI	AGCT	2 cut(s)	38, 167
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	146, 422
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AseI	ATTAAT	2 cut(s)	185, 321
Asp718I	GGTACC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	155, 305
BanI	GGYRCC	2 cut(s)	256, 437
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	212, 233
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	3 cut(s)	98, 330, 368
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	2 cut(s)	258, 439
BmrFI	CCNGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	364
BseYI	CCCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	2 cut(s)	256, 437
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	81, 161
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	302
BspLI	GGNNCC	2 cut(s)	258, 439
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	2 cut(s)	256, 437
BsrDI	GCAATG	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	81, 161
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	289
BstEII	GGTNACC	1 cut(s)	455
BstKTI	GATC	2 cut(s)	84, 164
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	81, 161
BstPI	GGTNACC	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	6, 45
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	5 cut(s)	4, 248, 257, 286, 326
CspCI	CAANNNNNGTGG	6 cut(s)	81, 116, 415, 430, 450, 465
CviJI	RGCY	9 cut(s)	23, 38, 119, 167, 181, 230, 236, 266, 386
CviKI_1	RGCY	9 cut(s)	23, 38, 119, 167, 181, 230, 236, 266, 386
CviQI	GTAC	5 cut(s)	4, 248, 257, 286, 326
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	2 cut(s)	83, 163
DpnII	GATC	2 cut(s)	81, 161
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	60, 161
Eco91I	GGTNACC	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaqI	GGGAC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	3 cut(s)	98, 330, 368
GluI	GCNGC	1 cut(s)	353
GsaI	CCCAGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	2 cut(s)	155, 305
Hpy166II	GTNNAC	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	35, 247
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	89, 273
HpyF3I	CTNAG	1 cut(s)	289
KpnI	GGTACC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 161
LguI	GCTCTTC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	211, 216, 276, 341, 473
Lsp1109I	GCAGC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	98, 330, 368
MaeIII	GTNAC	3 cut(s)	298, 395, 455
MalI	GATC	2 cut(s)	83, 163
MboI	GATC	2 cut(s)	81, 161
MboII	GAAGA	2 cut(s)	167, 373
MluCI	AATT	8 cut(s)	75, 146, 186, 281, 318, 335, 422, 480
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	2 cut(s)	238, 376
MseI	TTAA	3 cut(s)	113, 185, 321
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	198
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	81, 161
NlaIV	GGNNCC	2 cut(s)	258, 439
PciSI	GCTCTTC	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PshBI	ATTAAT	2 cut(s)	185, 321
PspEI	GGTNACC	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	258, 439
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	5 cut(s)	5, 249, 258, 287, 327
RsaNI	GTAC	5 cut(s)	4, 248, 257, 286, 326
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	113, 185, 321
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	2 cut(s)	81, 161
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	7 cut(s)	40, 145, 169, 249, 258, 295, 331
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	8 cut(s)	75, 146, 186, 281, 318, 335, 422, 480
SspMI	CTAG	3 cut(s)	98, 330, 368
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	391
TasI	AATT	8 cut(s)	75, 146, 186, 281, 318, 335, 422, 480
TatI	WGTACW	2 cut(s)	3, 285
Tru1I	TTAA	3 cut(s)	113, 185, 321
Tru9I	TTAA	3 cut(s)	113, 185, 321
TscAI	CASTG	2 cut(s)	13, 52
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	13, 52
VspI	ATTAAT	2 cut(s)	185, 321
XapI	RAATTY	2 cut(s)	146, 422
XspI	CTAG	3 cut(s)	98, 330, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.