RchiOBHm_Chr1g0363741

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
55066870 .. 55070262
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58845

Sequence Viewer

Length: 1560 bp
ATGGACTGTCAATGTAAAAAACATGAAGAGCTTACATTAAAGGAAACACCAACATGGGCAGTTGCTGTGGTCTGTTTTGTGTTGCTTGTAATATCAATTTTCATTGAGCATGTCCTAAACTTCATAGGAAAGTGGTTTAAAAGTAGACACAAGCGTGCTCTCTATGAAGCTCTTGAGAAGCTCAAATCAGGTCTTATGCTGTTGGGATTCCTGTCCTTGCTCCTAACAGTTCTACAAGAACCAATCGCTGGTATATGTATACCGAAGAGTGTTGGAGCCACTTGGAATCCTTGCAATGATGACACTTCAGATAGTAAGGGTAGAAAACTTCATGAATACTCAGATTCTGTCTTCAGTTTCCGGCGCAAATTAGCCGCAAAAGGAACTGATAAGTGCATGGAGAAAGGTAAAGTTGCCTTTATATCTTCATATGGGATTCACCAGCTCCATGTGTTTATCTTTGTGCTAGCAGTTTTTCATGTACTCTATTGCATCACAACCTTGGCTTTGGGAAGACACAAGATGAGAATATGGAAGTATTGGGAGAATGAGACAAAAACAGTTGAATACCAGTTCAGTACTGATCCAGAAAGATTTAGGTATGCGAGGGATACATCATTCGGTAGAAGGCATTTGAACTTCTGGAGCCAGTCACCAGTTTTCCTTTGGATTGTGTGCTTCTTCAGACAGTTCTTCAGGTCAGTTACTAAGACTGATTACCTGACTCTGAGGCATGGCTTTATCATGGCACATTTAGCACCTGGGAGTGAAACGACCTTTGATTTTCGGAAGTACATAAGTAGATCTCTTGAAGATGACTTCTTAGTTATTGTTGAGATCAGTCCAATTATATGGTTCTCTGCAGTGTTGTTCCTGTTGTCTAGTGCATATGGATGGTATTCTTATCTCTGGCTGCCATTTATCTCCTTATTTATAATCCTCTTGGTGGGAACTAAACTACAAGTGATTATAACCAAGATGGGGATGAGGATCCAGGAAAGAGGGGATGTGGTGATGGGTGCCCCGCTTGTTCAACCTGGTGATCACTACTTCTGGTTTGGATGCCCCCGCTTGATGCTCTTCCTCATCCACTTTGTTTTGTTCCAGAATGCATTTCAGCTGGCCTTCTTTGCGTGGAGTGCATGGGAGTTTGGCATACATTCTTGCTTCCCCCCAAACCCTGAAAGTATCGCCATCAGGATCTCAATGGGGGTTATCATACAAGTTTTATGTAGTTATGTGACTCTGCCGCTCTATGCTTTAGTGACACAGATGGGTTCTAGTATGAAACCCACTGTTTTTAATGAGGGAGTGGCAGAAGCAGTGAAAAGTTGGCATCACAAAGCAAAAAAGAAAGTAAAGCACAGCCTGCATTCAGAAAGAACCACACCATTCTCAAGTACTAGACCTGGAACTCCTACACATGGCATGTCACCAGTTCATCTATTGGACAATGTCAACAACCGCAGCGATGAGGATGACTTGTTTCCACCTCCTGAAGCATCAATCGCCGTCGAAATGGAACATTTGGACACTGAAGGGTCACAAAGGAACAATTAG

Protein Analysis

519

Amino Acids

59.72

Weight (kDa)

8.89

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 12 - 485 8.8e-229 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 935, 971
AccB1I GGYRCC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 1252
AccI GTMKAC 2 cut(s) 145, 259
AciI CCGC 5 cut(s) 375, 1025, 1069, 1250, 1465
AclWI GGATC 4 cut(s) 578, 985, 998, 1208
AcuI CTGAAG 6 cut(s) 291, 337, 667, 679, 1518, 1557
AfaI GTAC 4 cut(s) 483, 580, 794, 1402
AfiI CCNNNNNNNGG 4 cut(s) 248, 946, 981, 1424
AgsI TTSAA 4 cut(s) 566, 637, 812, 1034
AjnI CCWGG 4 cut(s) 760, 993, 1036, 1408
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 5 cut(s) 31, 170, 181, 445, 1120
AluI AGCT 5 cut(s) 31, 170, 181, 445, 1120
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 4 cut(s) 578, 985, 998, 1208
AlwNI CAGNNNCTG 2 cut(s) 65, 347
AoxI GGCC 1 cut(s) 1122
ApeKI GCWGC 2 cut(s) 913, 1467
AspLEI GCGC 1 cut(s) 366
AsuHPI GGTGA 5 cut(s) 431, 645, 1024, 1052, 1425
AsuNHI GCTAGC 1 cut(s) 466
BaeGI GKGCMC 1 cut(s) 1024
BamHI GGATCC 1 cut(s) 990
BanI GGYRCC 1 cut(s) 1019
BbsI GAAGAC 2 cut(s) 343, 520
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 900, 1479
BccI CCATC 5 cut(s) 888, 973, 1009, 1202, 1267
BceAI ACGGC 1 cut(s) 1496
BciT130I CCWGG 4 cut(s) 762, 995, 1038, 1410
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 1042
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 4 cut(s) 467, 882, 1281, 1404
BfmI CTRYAG 1 cut(s) 861
BfuI GTATCC 1 cut(s) 604
BglII AGATCT 1 cut(s) 803
BisI GCNGC 4 cut(s) 375, 914, 1250, 1468
BlsI GCNGC 4 cut(s) 376, 915, 1251, 1469
BmcAI AGTACT 2 cut(s) 580, 1402
Bme1390I CCNGG 4 cut(s) 762, 995, 1038, 1410
BmiI GGNNCC 4 cut(s) 277, 647, 992, 1021
BmrFI CCNGG 4 cut(s) 762, 995, 1038, 1410
BmsI GCATC 5 cut(s) 501, 1052, 1065, 1345, 1511
BmtI GCTAGC 1 cut(s) 470
BpiI GAAGAC 2 cut(s) 343, 520
BpmI CTGGAG 1 cut(s) 664
BpuEI CTTGAG 2 cut(s) 194, 1381
BsaBI GATNNNNATC 1 cut(s) 989
BsaJI CCNNGG 2 cut(s) 501, 761
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 946, 981, 1424
Bse1I ACTGG 4 cut(s) 571, 649, 656, 1436
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 989
BseBI CCWGG 4 cut(s) 762, 995, 1038, 1410
BseDI CCNNGG 2 cut(s) 501, 761
BseGI GGATG 6 cut(s) 899, 990, 1012, 1067, 1086, 1483
BseJI GATNNNNATC 1 cut(s) 989
BseLI CCNNNNNNNGG 4 cut(s) 248, 946, 981, 1424
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 354, 719
BseNI ACTGG 4 cut(s) 571, 649, 656, 1436
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 2 cut(s) 900, 1479
BshFI GGCC 1 cut(s) 1124
BshNI GGYRCC 1 cut(s) 1019
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 4 cut(s) 248, 946, 981, 1424
BsmAI GTCTC 1 cut(s) 545
BsmI GAATGC 2 cut(s) 1114, 1372
BsnI GGCC 1 cut(s) 1124
Bsp1286I GDGCHC 2 cut(s) 160, 1024
Bsp143I GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
BspACI CCGC 5 cut(s) 375, 1025, 1069, 1250, 1465
BspANI GGCC 1 cut(s) 1124
BspCNI CTCAG 2 cut(s) 353, 720
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 4 cut(s) 277, 647, 992, 1021
BspMAI CTGCAG 1 cut(s) 865
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 4 cut(s) 578, 985, 998, 1208
BspQI GCTCTTC 2 cut(s) 21, 1085
BspT107I GGYRCC 1 cut(s) 1019
BsrBI CCGCTC 1 cut(s) 1252
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 4 cut(s) 571, 649, 656, 1436
BssECI CCNNGG 2 cut(s) 501, 761
BssMI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
BssNAI GTATAC 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 501
Bst1107I GTATAC 1 cut(s) 260
Bst2UI CCWGG 4 cut(s) 762, 995, 1038, 1410
Bst4CI ACNGT 5 cut(s) 8, 229, 562, 690, 1297
Bst6I CTCTTC 3 cut(s) 21, 260, 1085
BstAPI GCANNNNNTGC 1 cut(s) 1369
BstC8I GCNNGC 4 cut(s) 156, 468, 1122, 1370
BstDEI CTNAG 4 cut(s) 340, 708, 728, 823
BstF5I GGATG 6 cut(s) 899, 990, 1012, 1067, 1086, 1483
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 6 cut(s) 586, 806, 840, 993, 1045, 1203
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
BstMWI GCNNNNNNNGC 5 cut(s) 755, 1130, 1139, 1369, 1508
BstNI CCWGG 4 cut(s) 762, 995, 1038, 1410
BstNSI RCATGY 2 cut(s) 113, 1432
BstSCI CCNGG 4 cut(s) 760, 993, 1036, 1408
BstSFI CTRYAG 1 cut(s) 861
BstSLI GKGCMC 1 cut(s) 1024
BstV1I GCAGC 2 cut(s) 900, 1479
BstV2I GAAGAC 2 cut(s) 343, 520
BstX2I RGATCY 3 cut(s) 803, 990, 1200
BstXI CCANNNNNNTGG 1 cut(s) 852
BstYI RGATCY 3 cut(s) 803, 990, 1200
BstZ17I GTATAC 1 cut(s) 260
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 1 cut(s) 1124
BtgZI GCGATG 1 cut(s) 1485
BtsCI GGATG 6 cut(s) 899, 990, 1012, 1067, 1086, 1483
BtsI GCAGTG 2 cut(s) 870, 1329
BtsIMutI CAGTG 4 cut(s) 870, 1293, 1329, 1533
Cac8I GCNNGC 4 cut(s) 156, 468, 1122, 1370
CaiI CAGNNNCTG 2 cut(s) 65, 347
CciI TCATGA 1 cut(s) 331
CfoI GCGC 1 cut(s) 366
CsiI ACCWGGT 1 cut(s) 1036
Csp6I GTAC 4 cut(s) 482, 579, 793, 1401
CviQI GTAC 4 cut(s) 482, 579, 793, 1401
DdeI CTNAG 4 cut(s) 340, 708, 728, 823
DpnI GATC 6 cut(s) 585, 805, 839, 992, 1044, 1202
DpnII GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
DraI TTTAAA 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 21, 260, 1085
EarI CTCTTC 3 cut(s) 21, 260, 1085
Eco130I CCWWGG 1 cut(s) 501
Eco57I CTGAAG 6 cut(s) 291, 337, 667, 679, 1518, 1557
EcoRII CCWGG 4 cut(s) 760, 993, 1036, 1408
EcoT14I CCWWGG 1 cut(s) 501
EcoT22I ATGCAT 1 cut(s) 1114
ErhI CCWWGG 1 cut(s) 501
FauI CCCGC 2 cut(s) 1032, 1076
FauNDI CATATG 2 cut(s) 430, 889
FbaI TGATCA 1 cut(s) 1042
FblI GTMKAC 2 cut(s) 145, 259
Fnu4HI GCNGC 4 cut(s) 375, 914, 1250, 1468
FokI GGATG 6 cut(s) 906, 997, 1019, 1073, 1074, 1490
Fsp4HI GCNGC 4 cut(s) 375, 914, 1250, 1468
FspBI CTAG 4 cut(s) 467, 882, 1281, 1404
GlaI GCGC 1 cut(s) 365
GluI GCNGC 4 cut(s) 375, 914, 1250, 1468
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 1 cut(s) 1124
HapII CCGG 1 cut(s) 361
HhaI GCGC 1 cut(s) 366
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HincII GTYRAC 1 cut(s) 1459
HindII GTYRAC 1 cut(s) 1459
HinfI GANTC 6 cut(s) 207, 286, 344, 436, 724, 1243
HpaII CCGG 1 cut(s) 361
HphI GGTGA 5 cut(s) 431, 645, 1024, 1052, 1425
Hpy166II GTNNAC 3 cut(s) 146, 260, 1459
Hpy188I TCNGA 6 cut(s) 310, 343, 686, 729, 789, 1378
Hpy188III TCNNGA 8 cut(s) 173, 332, 587, 643, 809, 1105, 1198, 1496
Hpy8I GTNNAC 3 cut(s) 146, 260, 1459
Hpy99I CGWCG 1 cut(s) 1517
HpyAV CCTTC 3 cut(s) 621, 1135, 1532
HpyCH4III ACNGT 5 cut(s) 8, 229, 562, 690, 1297
HpyCH4V TGCA 8 cut(s) 294, 396, 492, 863, 887, 1112, 1142, 1372
HpyF10VI GCNNNNNNNGC 5 cut(s) 755, 1130, 1139, 1369, 1508
HpyF3I CTNAG 4 cut(s) 340, 708, 728, 823
HspAI GCGC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 1042
Kzo9I GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
LguI GCTCTTC 2 cut(s) 21, 1085
LmnI GCTCC 4 cut(s) 225, 275, 450, 645
Lsp1109I GCAGC 2 cut(s) 900, 1479
LweI GCATC 5 cut(s) 501, 1052, 1065, 1345, 1511
MabI ACCWGGT 1 cut(s) 1036
MaeI CTAG 4 cut(s) 467, 882, 1281, 1404
MaeIII GTNAC 6 cut(s) 651, 703, 1240, 1264, 1431, 1542
MalI GATC 6 cut(s) 585, 805, 839, 992, 1044, 1202
MbiI CCGCTC 1 cut(s) 1252
MboI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
MboII GAAGA 9 cut(s) 38, 277, 343, 417, 525, 673, 685, 824, 1072
MflI RGATCY 3 cut(s) 803, 990, 1200
MhlI GDGCHC 2 cut(s) 160, 1024
MluCI AATT 4 cut(s) 96, 368, 846, 1555
MlyI GAGTC 2 cut(s) 718, 1237
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 9 cut(s) 600, 723, 950, 981, 995, 1094, 1300, 1468, 1503
Mph1103I ATGCAT 1 cut(s) 1114
MseI TTAA 3 cut(s) 38, 138, 1302
MslI CAYNNNNRTG 3 cut(s) 52, 153, 892
MspA1I CMGCKG 1 cut(s) 1120
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 4 cut(s) 762, 995, 1038, 1410
Mva1269I GAATGC 2 cut(s) 1114, 1372
MvaI CCWGG 4 cut(s) 762, 995, 1038, 1410
MwoI GCNNNNNNNGC 5 cut(s) 755, 1130, 1139, 1369, 1508
NdeI CATATG 2 cut(s) 430, 889
NdeII GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
NheI GCTAGC 1 cut(s) 466
NlaIV GGNNCC 4 cut(s) 277, 647, 992, 1021
NmuCI GTSAC 5 cut(s) 651, 1240, 1264, 1431, 1542
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 2 cut(s) 113, 1432
OliI CACNNNNGTG 1 cut(s) 153
PagI TCATGA 1 cut(s) 331
PciSI GCTCTTC 2 cut(s) 21, 1085
PctI GAATGC 2 cut(s) 1114, 1372
PfeI GAWTC 4 cut(s) 207, 286, 344, 436
PflFI GACNNNGTC 1 cut(s) 1454
PflMI CCANNNNNTGG 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 993
PkrI GCNGC 4 cut(s) 376, 915, 1251, 1469
PleI GAGTC 2 cut(s) 718, 1237
PpsI GAGTC 2 cut(s) 718, 1237
PsiI TTATAA 2 cut(s) 935, 971
Psp6I CCWGG 4 cut(s) 760, 993, 1036, 1408
PspGI CCWGG 4 cut(s) 760, 993, 1036, 1408
PspN4I GGNNCC 4 cut(s) 277, 647, 992, 1021
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 2 cut(s) 65, 347
PsuI RGATCY 3 cut(s) 803, 990, 1200
PsyI GACNNNGTC 1 cut(s) 1454
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 4 cut(s) 483, 580, 794, 1402
RsaNI GTAC 4 cut(s) 482, 579, 793, 1401
RseI CAYNNNNRTG 3 cut(s) 52, 153, 892
SapI GCTCTTC 2 cut(s) 21, 1085
SaqAI TTAA 3 cut(s) 38, 138, 1302
SatI GCNGC 4 cut(s) 375, 914, 1250, 1468
Sau3AI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
ScaI AGTACT 2 cut(s) 580, 1402
SchI GAGTC 2 cut(s) 718, 1237
ScrFI CCNGG 4 cut(s) 762, 995, 1038, 1410
SduI GDGCHC 2 cut(s) 160, 1024
SexAI ACCWGGT 1 cut(s) 1036
SfaNI GCATC 5 cut(s) 501, 1052, 1065, 1345, 1511
SfcI CTRYAG 1 cut(s) 861
SmiMI CAYNNNNRTG 3 cut(s) 52, 153, 892
SmlI CTYRAG 2 cut(s) 173, 1396
SmoI CTYRAG 2 cut(s) 173, 1396
Sse9I AATT 4 cut(s) 96, 368, 846, 1555
SsiI CCGC 5 cut(s) 375, 1025, 1069, 1250, 1465
SspMI CTAG 4 cut(s) 467, 882, 1281, 1404
StyD4I CCNGG 4 cut(s) 760, 993, 1036, 1408
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 5 cut(s) 8, 229, 562, 690, 1297
TaqI TCGA 1 cut(s) 1515
TasI AATT 4 cut(s) 96, 368, 846, 1555
TatI WGTACW 4 cut(s) 481, 578, 792, 1400
TauI GCSGC 2 cut(s) 377, 1252
TfiI GAWTC 4 cut(s) 207, 286, 344, 436
Tru1I TTAA 3 cut(s) 38, 138, 1302
Tru9I TTAA 3 cut(s) 38, 138, 1302
TscAI CASTG 4 cut(s) 870, 1300, 1329, 1540
TseFI GTSAC 5 cut(s) 651, 1240, 1264, 1431, 1542
TseI GCWGC 2 cut(s) 913, 1467
Tsp45I GTSAC 5 cut(s) 651, 1240, 1264, 1431, 1542
TspRI CASTG 4 cut(s) 870, 1300, 1329, 1540
Tth111I GACNNNGTC 1 cut(s) 1454
Van91I CCANNNNNTGG 1 cut(s) 248
XceI RCATGY 2 cut(s) 113, 1432
XcmI CCANNNNNNNNNTGG 1 cut(s) 663
XmiI GTMKAC 2 cut(s) 145, 259
XspI CTAG 4 cut(s) 467, 882, 1281, 1404
ZrmI AGTACT 2 cut(s) 580, 1402
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.