Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Reverse (-)

57156530 .. 57165793

Gene Structure 9264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAACTTGAATATGAGCGTACATTAGAGAAAACACCAACATGGGCAGTTGCTGTGGTCTGTTTTGTGTTGCTTGTAATATCAATTTTCATTGAGCATGTCATAAACTTCATAGGAAAGTGGTTTAAAAGTAGACACAAGCGAGCTCTCTATGAAGCTCTTGAGAAGCTCAAATCAGAGCTTATGCTGTTGGGATTCCTGTCCTTGCTCCTAACAGTTCTACAAGATCCAATCGCTGGTATATGTATACCGAAGAGCGTTGCAGCCACTTGGCATCCTTGCAATGATGCCACTTCAGATACTAAGGCTAGAAAACTTCATGAATCCTCAGATTCTGTCTTCAGTTTCCGGCGCAAATTAGCCACAAAAGGATATGATAATTGCACGGAGAATATAATCCTCTTGGTGGGAACTAAACTACAAGTGATTATAACCATGATGGGGATGAGGATCCAGGAAAGAGGGGGTGTGGTGATGGGTGCACCGCTTGTTCAACCTGGTGATCACTACTTCTGGTTTGGACGCCCCCGCTTCATGCTCTTCCTCATCCACTTTGTTTTGTTCCAGAATGCATTTCAGCTGGCCTTCTTTGCATGGAGTACATGGCAGTTTGGCATAGATTCTTGCTTCCACCAAACCCCTGAAGATATCGCCATCAGGATCTCAATGGGGGTTATCATACAAGTTTTATGTAGTTATGTGACTCTACCGCTCTATGCTTTAGTGACACAGATGGGTTCTAGTATGAAACCCACTGTTTTTAATGAGGGAGTGGCAGAAGCAGTGAAAAGTTGGCATCACAAAGCAAAAAAGAAAGTAAAGCACAGCCTGCATTCAGAGAGAAGCACACCATTGTCAAGTAGACCTGGAACTCCTACACATGGCATGTCACCAGTTCATCTATTGCACAATGTCAACAACCGCAGTGATGAGGATGACTTGTTTCCACCTCCAGAAGCATCAATCGTCGTCGAAATGGAACATTTGGACACTGAAGGTTCACAAAAGAACAATGTTGGACCGAGTGAAAGAGGAGCAATTAGGCAAACTAGTACTGTTAGAGAATTAGGCCAAATTCATGAGCCTCCAGCTCCAAGCCCCTCTCAGGCTCAGCATGTAGTTAAAAGTCCGTCAAGCTTCTCATTTGGTACATCAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

387

Amino Acids

43.47

Weight (kDa)

8.81

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mlo	PF03094	6 - 130	2.7e-46	Mlo family
Mlo	PF03094	132 - 305	1.1e-83	Mlo family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccBSI	CCGCTC	1 cut(s)	712
AccI	GTMKAC	3 cut(s)	133, 247, 862
AciI	CCGC	4 cut(s)	485, 529, 710, 922
AclWI	GGATC	4 cut(s)	221, 445, 458, 668
AcsI	RAATTY	1 cut(s)	1074
AcuI	CTGAAG	4 cut(s)	279, 325, 663, 1014
AcyI	GRCGYC	1 cut(s)	523
AfaI	GTAC	4 cut(s)	22, 601, 1054, 1150
AfiI	CCNNNNNNNGG	5 cut(s)	236, 406, 441, 881, 1105
AgsI	TTSAA	2 cut(s)	11, 494
AhlI	ACTAGT	1 cut(s)	1049
AjnI	CCWGG	3 cut(s)	453, 496, 865
AluBI	AGCT	7 cut(s)	146, 158, 169, 181, 580, 1091, 1137
AluI	AGCT	7 cut(s)	146, 158, 169, 181, 580, 1091, 1137
Alw21I	GWGCWC	2 cut(s)	148, 484
Alw44I	GTGCAC	1 cut(s)	480
AlwI	GGATC	4 cut(s)	221, 445, 458, 668
AlwNI	CAGNNNCTG	2 cut(s)	53, 335
AoxI	GGCC	2 cut(s)	582, 1069
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	1074
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	1019
AsuHPI	GGTGA	3 cut(s)	484, 512, 882
AvaII	GGWCC	1 cut(s)	1019
BaeGI	GKGCMC	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	148, 484
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	4 cut(s)	433, 469, 662, 727
BciT130I	CCWGG	3 cut(s)	455, 498, 867
BclI	TGATCA	1 cut(s)	502
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	3 cut(s)	309, 741, 1050
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	1110
BlsI	GCNGC	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	1054
Bme1390I	CCNGG	3 cut(s)	455, 498, 867
Bme18I	GGWCC	1 cut(s)	1019
BmgT120I	GGNCC	1 cut(s)	1019
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	3 cut(s)	455, 498, 867
BmsI	GCATC	4 cut(s)	277, 283, 805, 968
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	2 cut(s)	936, 1071
Bpu1102I	GCTNAGC	1 cut(s)	1110
BpuEI	CTTGAG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	5 cut(s)	236, 406, 441, 881, 1105
Bse1I	ACTGG	1 cut(s)	893
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	3 cut(s)	455, 498, 867
BseGI	GGATG	4 cut(s)	274, 450, 546, 940
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	5 cut(s)	236, 406, 441, 881, 1105
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	342, 1118, 1124
BseNI	ACTGG	1 cut(s)	893
BseRI	GAGGAG	1 cut(s)	1047
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	584, 1071
BsiHKAI	GWGCWC	2 cut(s)	148, 484
BsiSI	CCGG	1 cut(s)	349
BslI	CCNNNNNNNGG	5 cut(s)	236, 406, 441, 881, 1105
BsmI	GAATGC	2 cut(s)	574, 832
BsnI	GGCC	2 cut(s)	584, 1071
Bsp1286I	GDGCHC	2 cut(s)	148, 484
Bsp143I	GATC	4 cut(s)	226, 450, 502, 660
Bsp1720I	GCTNAGC	1 cut(s)	1110
BspACI	CCGC	4 cut(s)	485, 529, 710, 922
BspANI	GGCC	2 cut(s)	584, 1071
BspCNI	CTCAG	3 cut(s)	341, 1117, 1123
BspHI	TCATGA	2 cut(s)	319, 1078
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	4 cut(s)	221, 445, 458, 668
BspQI	GCTCTTC	2 cut(s)	248, 545
BsrBI	CCGCTC	1 cut(s)	712
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	893
BssMI	GATC	4 cut(s)	226, 450, 502, 660
BssNAI	GTATAC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	523
Bst1107I	GTATAC	1 cut(s)	248
Bst2UI	CCWGG	3 cut(s)	455, 498, 867
Bst4CI	ACNGT	3 cut(s)	217, 757, 1057
Bst6I	CTCTTC	2 cut(s)	248, 545
BstACI	GRCGYC	1 cut(s)	523
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstC8I	GCNNGC	3 cut(s)	144, 582, 830
BstDEI	CTNAG	4 cut(s)	303, 328, 1104, 1110
BstF5I	GGATG	4 cut(s)	274, 450, 546, 940
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	4 cut(s)	229, 453, 505, 663
BstMBI	GATC	4 cut(s)	226, 450, 502, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 829
BstNI	CCWGG	3 cut(s)	455, 498, 867
BstNSI	RCATGY	3 cut(s)	101, 889, 1118
BstSCI	CCNGG	3 cut(s)	453, 496, 865
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	3 cut(s)	226, 450, 660
BstYI	RGATCY	3 cut(s)	226, 450, 660
BstZ17I	GTATAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	584, 1071
BtsCI	GGATG	4 cut(s)	274, 450, 546, 940
BtsI	GCAGTG	2 cut(s)	789, 931
BtsIMutI	CAGTG	4 cut(s)	753, 789, 931, 990
Cac8I	GCNNGC	3 cut(s)	144, 582, 830
CaiI	CAGNNNCTG	2 cut(s)	53, 335
CciI	TCATGA	2 cut(s)	319, 1078
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	1019
CseI	GACGC	1 cut(s)	531
CsiI	ACCWGGT	1 cut(s)	496
Csp6I	GTAC	4 cut(s)	21, 600, 1053, 1149
CviQI	GTAC	4 cut(s)	21, 600, 1053, 1149
DdeI	CTNAG	4 cut(s)	303, 328, 1104, 1110
DpnI	GATC	4 cut(s)	228, 452, 504, 662
DpnII	GATC	4 cut(s)	226, 450, 502, 660
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	248, 545
EarI	CTCTTC	2 cut(s)	248, 545
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	1019
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	4 cut(s)	279, 325, 663, 1014
EcoICRI	GAGCTC	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	453, 496, 865
EcoRV	GATATC	1 cut(s)	649
EcoT22I	ATGCAT	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	148
FauI	CCCGC	1 cut(s)	536
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	3 cut(s)	133, 247, 862
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	4 cut(s)	261, 457, 533, 947
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	3 cut(s)	309, 741, 1050
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	2 cut(s)	936, 1071
HaeIII	GGCC	2 cut(s)	584, 1071
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	531
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	523
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HindIII	AAGCTT	1 cut(s)	1135
HinfI	GANTC	5 cut(s)	195, 323, 332, 620, 703
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	3 cut(s)	484, 512, 882
Hpy166II	GTNNAC	6 cut(s)	134, 248, 482, 863, 916, 1001
Hpy188I	TCNGA	4 cut(s)	178, 298, 331, 838
Hpy188III	TCNNGA	7 cut(s)	161, 320, 565, 658, 953, 1079, 1155
Hpy8I	GTNNAC	6 cut(s)	134, 248, 482, 863, 916, 1001
Hpy99I	CGWCG	2 cut(s)	971, 974
HpyAV	CCTTC	2 cut(s)	595, 989
HpyCH4III	ACNGT	3 cut(s)	217, 757, 1057
HpyCH4V	TGCA	8 cut(s)	263, 282, 384, 482, 572, 593, 832, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 829
HpyF3I	CTNAG	4 cut(s)	303, 328, 1104, 1110
Hsp92I	GRCGYC	1 cut(s)	523
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	226, 450, 502, 660
LguI	GCTCTTC	2 cut(s)	248, 545
LmnI	GCTCC	3 cut(s)	213, 1034, 1096
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	4 cut(s)	277, 283, 805, 968
MabI	ACCWGGT	1 cut(s)	496
MaeI	CTAG	3 cut(s)	309, 741, 1050
MaeIII	GTNAC	3 cut(s)	700, 724, 888
MalI	GATC	4 cut(s)	228, 452, 504, 662
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	4 cut(s)	226, 450, 502, 660
MboII	GAAGA	4 cut(s)	265, 331, 532, 656
MflI	RGATCY	3 cut(s)	226, 450, 660
MhlI	GDGCHC	2 cut(s)	148, 484
MluCI	AATT	6 cut(s)	84, 356, 379, 1038, 1064, 1074
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	997
Mph1103I	ATGCAT	1 cut(s)	574
MseI	TTAA	3 cut(s)	126, 762, 1122
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	3 cut(s)	455, 498, 867
Mva1269I	GAATGC	2 cut(s)	574, 832
MvaI	CCWGG	3 cut(s)	455, 498, 867
MwoI	GCNNNNNNNGC	2 cut(s)	590, 829
NdeII	GATC	4 cut(s)	226, 450, 502, 660
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	3 cut(s)	700, 724, 888
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	3 cut(s)	101, 889, 1118
PagI	TCATGA	2 cut(s)	319, 1078
PciSI	GCTCTTC	2 cut(s)	248, 545
PctI	GAATGC	2 cut(s)	574, 832
PfeI	GAWTC	4 cut(s)	195, 323, 332, 620
PflMI	CCANNNNNTGG	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PsiI	TTATAA	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	3 cut(s)	453, 496, 865
PspGI	CCWGG	3 cut(s)	453, 496, 865
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	1019
PstNI	CAGNNNCTG	2 cut(s)	53, 335
PsuI	RGATCY	3 cut(s)	226, 450, 660
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	4 cut(s)	22, 601, 1054, 1150
RsaNI	GTAC	4 cut(s)	21, 600, 1053, 1149
RseI	CAYNNNNRTG	1 cut(s)	40
SacI	GAGCTC	1 cut(s)	148
SapI	GCTCTTC	2 cut(s)	248, 545
SaqAI	TTAA	3 cut(s)	126, 762, 1122
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	4 cut(s)	226, 450, 502, 660
Sau96I	GGNCC	1 cut(s)	1019
ScaI	AGTACT	1 cut(s)	1054
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	3 cut(s)	455, 498, 867
SduI	GDGCHC	2 cut(s)	148, 484
SexAI	ACCWGGT	1 cut(s)	496
SfaNI	GCATC	4 cut(s)	277, 283, 805, 968
SinI	GGWCC	1 cut(s)	1019
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	1049
Sse9I	AATT	6 cut(s)	84, 356, 379, 1038, 1064, 1074
SsiI	CCGC	4 cut(s)	485, 529, 710, 922
SspMI	CTAG	3 cut(s)	309, 741, 1050
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	3 cut(s)	453, 496, 865
TaaI	ACNGT	3 cut(s)	217, 757, 1057
TaqI	TCGA	1 cut(s)	972
TaqII	GACCGA	1 cut(s)	1036
TasI	AATT	6 cut(s)	84, 356, 379, 1038, 1064, 1074
TatI	WGTACW	2 cut(s)	599, 1052
TfiI	GAWTC	4 cut(s)	195, 323, 332, 620
Tru1I	TTAA	3 cut(s)	126, 762, 1122
Tru9I	TTAA	3 cut(s)	126, 762, 1122
TscAI	CASTG	4 cut(s)	760, 789, 931, 997
TseFI	GTSAC	3 cut(s)	700, 724, 888
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	3 cut(s)	700, 724, 888
TspDTI	ATGAA	9 cut(s)	79, 100, 168, 308, 336, 523, 761, 887, 1067
TspGWI	ACGGA	2 cut(s)	401, 1119
TspRI	CASTG	4 cut(s)	760, 789, 931, 997
Van91I	CCANNNNNTGG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	1019
XapI	RAATTY	1 cut(s)	1074
XceI	RCATGY	3 cut(s)	101, 889, 1118
XmiI	GTMKAC	3 cut(s)	133, 247, 862
XspI	CTAG	3 cut(s)	309, 741, 1050
ZrmI	AGTACT	1 cut(s)	1054
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.