Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009165.1

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Forward (+)

72204 .. 74922

Gene Structure 2719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009165.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atggaccctcaatgtaaaaaacatgaagagcttacattagagaaaacaccaacatgggcagttgctgtggtctgttttgtgttgcttgtaatatcaattttcattgagcatgtcctaaacttcataggaaagtggtttaaaagtagacacaagcgtgctctctatgaagctcttgagaagctcaaatcagttctacaagaaccaatcgctagtatatgtataccgaagagtgttggagccacttggaatccttgcaatcatggcacttcagatagtaaggctagaaaacttcatgaatactcagattctgtctccagtttccggcgcaaattagccaaaaaaggaactgataagtgcatggagaaaggtaaagttgcctttgtatcttcatatgggattcaccagctccatgtgtttatctttgtgatagcagtttttcatgtgctctattgcatcacaaccttggctttgggaagacacaagatgagaatatggaagtattgggagaatgagacaaaaacagttgaataccagttcagtactgatccagaaagatttaggtatgcgagggatacatcattcggtagaaggcatttgaacttctggagccagtcaccagttttcctttggattgtgtgcttcttcagacagttcatcaggtcagttactaagactgattacctgactctgaggcatggctttatcatggcacatttagcacctgggagtgaaacgacctttgattttcggaagtacataagtagatctcttgaagatgacttcttagttattgttgggatcaggatccaggaaagagggggtgtggtgatgggtgcaccgcttgttcaacctggtgatcactacttctggtttggacgcccccgcttcatgctcttcctcatgcactttgttttgttccagaatgcatttcagctggccttctttgcatggagtacatggcagtttggcatagattcttgcttccaccaaacccctgaagatatcgccatcaggatctcaatggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

342

Amino Acids

40.01

Weight (kDa)

9.45

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	145, 220
AciI	CCGC	2 cut(s)	839, 883
AclWI	GGATC	5 cut(s)	539, 799, 806, 812, 1022
AcuI	CTGAAG	3 cut(s)	252, 628, 1017
AcyI	GRCGYC	1 cut(s)	877
AfaI	GTAC	3 cut(s)	541, 755, 955
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	527, 598, 773, 848
AjnI	CCWGG	3 cut(s)	721, 807, 850
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	5 cut(s)	31, 170, 181, 406, 934
AluI	AGCT	5 cut(s)	31, 170, 181, 406, 934
Alw21I	GWGCWC	3 cut(s)	160, 447, 838
Alw26I	GTCTC	2 cut(s)	316, 506
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	5 cut(s)	539, 799, 806, 812, 1022
AlwNI	CAGNNNCTG	2 cut(s)	65, 308
AoxI	GGCC	1 cut(s)	936
ApaLI	GTGCAC	1 cut(s)	834
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	392, 606, 838, 866
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	838
BamHI	GGATCC	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	481
Bbv12I	GWGCWC	3 cut(s)	160, 447, 838
BccI	CCATC	2 cut(s)	823, 1016
BciT130I	CCWGG	3 cut(s)	723, 809, 852
BciVI	GTATCC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	2 cut(s)	316, 506
BfaI	CTAG	2 cut(s)	210, 282
BfuI	GTATCC	1 cut(s)	565
BglII	AGATCT	1 cut(s)	764
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	3 cut(s)	723, 809, 852
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	6, 238, 608, 806
BmrFI	CCNGG	3 cut(s)	723, 809, 852
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	481
BpmI	CTGGAG	2 cut(s)	298, 625
BpuEI	CTTGAG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	803
BsaHI	GRCGYC	1 cut(s)	877
BsaJI	CCNNGG	2 cut(s)	462, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	4 cut(s)	315, 532, 610, 617
Bse8I	GATNNNNATC	1 cut(s)	803
BseBI	CCWGG	3 cut(s)	723, 809, 852
BseDI	CCNNGG	2 cut(s)	462, 722
BseJI	GATNNNNATC	1 cut(s)	803
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	315, 680
BseNI	ACTGG	4 cut(s)	315, 532, 610, 617
BseSI	GKGCMC	1 cut(s)	838
BshFI	GGCC	1 cut(s)	938
BsiHKAI	GWGCWC	3 cut(s)	160, 447, 838
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	316, 506
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	1 cut(s)	938
Bsp1286I	GDGCHC	3 cut(s)	160, 447, 838
Bsp143I	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
BspACI	CCGC	2 cut(s)	839, 883
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	2 cut(s)	314, 681
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	4 cut(s)	6, 238, 608, 806
BspPI	GGATC	5 cut(s)	539, 799, 806, 812, 1022
BspQI	GCTCTTC	2 cut(s)	21, 899
BsrI	ACTGG	4 cut(s)	315, 532, 610, 617
BssECI	CCNNGG	2 cut(s)	462, 722
BssMI	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
BssNAI	GTATAC	1 cut(s)	221
BssNI	GRCGYC	1 cut(s)	877
BssT1I	CCWWGG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	221
Bst2UI	CCWGG	3 cut(s)	723, 809, 852
Bst4CI	ACNGT	2 cut(s)	523, 651
Bst6I	CTCTTC	3 cut(s)	21, 221, 899
BstACI	GRCGYC	1 cut(s)	877
BstC8I	GCNNGC	2 cut(s)	156, 936
BstDEI	CTNAG	4 cut(s)	301, 669, 689, 784
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	6 cut(s)	547, 767, 801, 807, 859, 1017
BstMAI	GTCTC	2 cut(s)	316, 506
BstMBI	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 716, 944
BstNI	CCWGG	3 cut(s)	723, 809, 852
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	721, 807, 850
BstSLI	GKGCMC	1 cut(s)	838
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	3 cut(s)	764, 804, 1014
BstYI	RGATCY	3 cut(s)	764, 804, 1014
BstZ17I	GTATAC	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	938
Cac8I	GCNNGC	2 cut(s)	156, 936
CaiI	CAGNNNCTG	2 cut(s)	65, 308
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	885
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	3 cut(s)	540, 754, 954
CviQI	GTAC	3 cut(s)	540, 754, 954
DdeI	CTNAG	4 cut(s)	301, 669, 689, 784
DpnI	GATC	6 cut(s)	546, 766, 800, 806, 858, 1016
DpnII	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
DraI	TTTAAA	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	21, 221, 899
EarI	CTCTTC	3 cut(s)	21, 221, 899
Eco130I	CCWWGG	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	3 cut(s)	252, 628, 1017
EcoRII	CCWGG	3 cut(s)	721, 807, 850
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	928
ErhI	CCWWGG	1 cut(s)	462
FauI	CCCGC	1 cut(s)	890
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	856
FblI	GTMKAC	2 cut(s)	145, 220
FspBI	CTAG	2 cut(s)	210, 282
GlaI	GCGC	1 cut(s)	326
GsuI	CTGGAG	2 cut(s)	298, 625
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	885
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	877
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	5 cut(s)	247, 305, 397, 685, 974
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	4 cut(s)	392, 606, 838, 866
Hpy166II	GTNNAC	3 cut(s)	146, 221, 836
Hpy188I	TCNGA	5 cut(s)	271, 304, 647, 690, 750
Hpy188III	TCNNGA	8 cut(s)	173, 293, 548, 604, 770, 802, 919, 1012
Hpy8I	GTNNAC	3 cut(s)	146, 221, 836
HpyAV	CCTTC	2 cut(s)	582, 949
HpyCH4III	ACNGT	2 cut(s)	523, 651
HpyCH4V	TGCA	7 cut(s)	255, 357, 453, 836, 904, 926, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 716, 944
HpyF3I	CTNAG	4 cut(s)	301, 669, 689, 784
Hsp92I	GRCGYC	1 cut(s)	877
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
LguI	GCTCTTC	2 cut(s)	21, 899
LmnI	GCTCC	3 cut(s)	236, 411, 606
LweI	GCATC	1 cut(s)	462
MabI	ACCWGGT	1 cut(s)	850
MaeI	CTAG	2 cut(s)	210, 282
MaeIII	GTNAC	2 cut(s)	612, 664
MalI	GATC	6 cut(s)	546, 766, 800, 806, 858, 1016
MboI	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
MboII	GAAGA	8 cut(s)	38, 238, 378, 486, 634, 785, 886, 1010
MflI	RGATCY	3 cut(s)	764, 804, 1014
MhlI	GDGCHC	3 cut(s)	160, 447, 838
MluCI	AATT	2 cut(s)	96, 329
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	18, 561, 684, 809, 908
Mph1103I	ATGCAT	1 cut(s)	928
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	2 cut(s)	52, 153
MspA1I	CMGCKG	1 cut(s)	934
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	3 cut(s)	723, 809, 852
Mva1269I	GAATGC	1 cut(s)	928
MvaI	CCWGG	3 cut(s)	723, 809, 852
MwoI	GCNNNNNNNGC	3 cut(s)	261, 716, 944
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
NlaIV	GGNNCC	4 cut(s)	6, 238, 608, 806
NmuCI	GTSAC	1 cut(s)	612
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	153
PagI	TCATGA	1 cut(s)	292
PciSI	GCTCTTC	2 cut(s)	21, 899
PctI	GAATGC	1 cut(s)	928
PfeI	GAWTC	4 cut(s)	247, 305, 397, 974
PfoI	TCCNGGA	1 cut(s)	807
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
Psp6I	CCWGG	3 cut(s)	721, 807, 850
PspGI	CCWGG	3 cut(s)	721, 807, 850
PspN4I	GGNNCC	4 cut(s)	6, 238, 608, 806
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	2 cut(s)	65, 308
PsuI	RGATCY	3 cut(s)	764, 804, 1014
PvuII	CAGCTG	1 cut(s)	934
RsaI	GTAC	3 cut(s)	541, 755, 955
RsaNI	GTAC	3 cut(s)	540, 754, 954
RseI	CAYNNNNRTG	2 cut(s)	52, 153
SapI	GCTCTTC	2 cut(s)	21, 899
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	6 cut(s)	544, 764, 798, 804, 856, 1014
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	541
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	3 cut(s)	723, 809, 852
SduI	GDGCHC	3 cut(s)	160, 447, 838
SexAI	ACCWGGT	1 cut(s)	850
SfaNI	GCATC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	52, 153
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	96, 329
SsiI	CCGC	2 cut(s)	839, 883
SspMI	CTAG	2 cut(s)	210, 282
StyD4I	CCNGG	3 cut(s)	721, 807, 850
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	523, 651
TasI	AATT	2 cut(s)	96, 329
TatI	WGTACW	3 cut(s)	539, 753, 953
TfiI	GAWTC	4 cut(s)	247, 305, 397, 974
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	612
Tsp45I	GTSAC	1 cut(s)	612
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XmiI	GTMKAC	2 cut(s)	145, 220
XspI	CTAG	2 cut(s)	210, 282
ZrmI	AGTACT	1 cut(s)	541
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.