Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009617.1

Orthogroup ID

OG0000744

Physical Location & Seq

Genomic Coordinates Forward (+)

42865 .. 45177

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009617.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgctgttgggattcctgtccttgctcctaacagttctacaagaaccaatcgctagtatatgtataccgaagagtgttggagccacttggaatccttgcaatcatggcacttcagatagtaaggctagaaaacttcatgaatactcagattctgtctccagtttccggcgcaaattagccaaaaaaggaactgataagtgcatggagaaaggtaaagttgcctttgtatcttcatatgggattcaccagctccatgtgtttatctttgtgatagcagtttttcatgtgctctattgcatcacaaccttggctttgggaagacacaagatgagaatatggaagtattgggagaatgagacaaaaacagttgaataccagttcagtactgatccagaaagatttaggtatgcgagggatacatcattcggtagaaggcatttgaacttctggagccagtcaccagttttcctttggattgtgtgcttcttcagacagttcatcaggtcagttactaagactgattacctgactctgaggcatggctttatcatggcacatttagcacctgggagtgaaacgacctttgattttcggaagtacataagtagatctcttgaagatgacttcttagttattgttgggatcaggatccaggaaagagggggtgtggtgatgggtgcaccgcttgttcaacctggtgatcactacttctggtttggacgcccccgcttcatgctcttcctcatgcactttgttttgttccagaatgcatttcagctggccttctttgcatggagtacatggcagtttggcatagattcttgcttccaccaaacccctgaagatatcgccatcaggatctcaatggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0010150 GO:0016020 GO:0032501 GO:0032502 GO:0043207 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

290

Amino Acids

33.82

Weight (kDa)

9.49

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11310 AT1G11310 AT1G11310 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT1G61560 AT2G39200
fragaria_vesca	FvH4_6g15610 FvH4_7g19790 FvH4_7g19790
malus_domestica	MD03G1115500.v1.1 MD04G1101000.v1.1 MD07G1176300.v1.1 MD11G1132700.v1.1 MD12G1120800.v1.1
prunus_persica	Prupe.2G215200_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G097900_v2.0.a1 Prupe.6G239000_v2.0.a1
pyrus_communis	pycom01g13760 pycom04g09590 pycom07g17050 pycom11g10950 pycom12g12000
rosa_chinensis	RchiOBHm_Chr1g0363741 RchiOBHm_Chr1g0363791 RchiOBHm_Chr3g0469191 RchiOBHm_Chr5g0059871
rosa_laevigata	RLG00000024367 RLG00000027549 RLG00000027550 RLG00000035334
rosa_multiflora	Rmu_sc0000548.1_g000016 Rmu_sc0000548.1_g000022 Rmu_sc0000548.1_g000024 Rmu_sc0000890.1_g000022 Rmu_sc0009165.1_g000015 Rmu_sc0009617.1_g000004 Rmu_sc0009617.1_g000011 Rmu_ssc0000479.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020700 Rroxscaffold_4G00292970 Rroxscaffold_4G00292990 Rroxscaffold_6G00412110
rosa_rugosa	Rorug01G0308900 Rorug03G0100100 Rorug05G0326600
rosa_samantha	Rh1AG317800 Rh1BG281100 Rh1CG297400 Rh1DG312200 Rh1DG312400 Rh3AG149400 Rh3BG172700 Rh3CG164000 Rh3DG202900 Rh5AG390900 Rh5BG402900 Rh5CG426800 Rh5DG418900
rosa_wichuraiana	Rw1G028190 Rw1G028200 Rw3G014100 Rw5G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	2 cut(s)	683, 727
AclWI	GGATC	5 cut(s)	383, 643, 650, 656, 866
AcuI	CTGAAG	3 cut(s)	96, 472, 861
AcyI	GRCGYC	1 cut(s)	721
AfaI	GTAC	3 cut(s)	385, 599, 799
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	371, 442, 617, 692
AjnI	CCWGG	3 cut(s)	565, 651, 694
AluBI	AGCT	2 cut(s)	250, 778
AluI	AGCT	2 cut(s)	250, 778
Alw21I	GWGCWC	2 cut(s)	291, 682
Alw26I	GTCTC	2 cut(s)	160, 350
Alw44I	GTGCAC	1 cut(s)	678
AlwI	GGATC	5 cut(s)	383, 643, 650, 656, 866
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	780
ApaLI	GTGCAC	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	171
AsuHPI	GGTGA	4 cut(s)	236, 450, 682, 710
BaeGI	GKGCMC	1 cut(s)	682
BamHI	GGATCC	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	2 cut(s)	291, 682
BccI	CCATC	2 cut(s)	667, 860
BciT130I	CCWGG	3 cut(s)	567, 653, 696
BciVI	GTATCC	1 cut(s)	409
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	160, 350
BfaI	CTAG	2 cut(s)	54, 126
BfuI	GTATCC	1 cut(s)	409
BglII	AGATCT	1 cut(s)	608
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	3 cut(s)	567, 653, 696
BmiI	GGNNCC	3 cut(s)	82, 452, 650
BmrFI	CCNGG	3 cut(s)	567, 653, 696
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	2 cut(s)	142, 469
BsaBI	GATNNNNATC	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	306, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	4 cut(s)	159, 376, 454, 461
Bse8I	GATNNNNATC	1 cut(s)	647
BseBI	CCWGG	3 cut(s)	567, 653, 696
BseDI	CCNNGG	2 cut(s)	306, 566
BseJI	GATNNNNATC	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	159, 524
BseNI	ACTGG	4 cut(s)	159, 376, 454, 461
BseSI	GKGCMC	1 cut(s)	682
BshFI	GGCC	1 cut(s)	782
BsiHKAI	GWGCWC	2 cut(s)	291, 682
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	160, 350
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	1 cut(s)	782
Bsp1286I	GDGCHC	2 cut(s)	291, 682
Bsp143I	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
BspACI	CCGC	2 cut(s)	683, 727
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	2 cut(s)	158, 525
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	82, 452, 650
BspPI	GGATC	5 cut(s)	383, 643, 650, 656, 866
BspQI	GCTCTTC	1 cut(s)	743
BsrI	ACTGG	4 cut(s)	159, 376, 454, 461
BssECI	CCNNGG	2 cut(s)	306, 566
BssMI	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
BssNAI	GTATAC	1 cut(s)	65
BssNI	GRCGYC	1 cut(s)	721
BssT1I	CCWWGG	1 cut(s)	306
Bst1107I	GTATAC	1 cut(s)	65
Bst2UI	CCWGG	3 cut(s)	567, 653, 696
Bst4CI	ACNGT	3 cut(s)	34, 367, 495
Bst6I	CTCTTC	2 cut(s)	65, 743
BstACI	GRCGYC	1 cut(s)	721
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	4 cut(s)	145, 513, 533, 628
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	6 cut(s)	391, 611, 645, 651, 703, 861
BstMAI	GTCTC	2 cut(s)	160, 350
BstMBI	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 560, 788
BstNI	CCWGG	3 cut(s)	567, 653, 696
BstSCI	CCNGG	3 cut(s)	565, 651, 694
BstSLI	GKGCMC	1 cut(s)	682
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	3 cut(s)	608, 648, 858
BstYI	RGATCY	3 cut(s)	608, 648, 858
BstZ17I	GTATAC	1 cut(s)	65
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	782
Cac8I	GCNNGC	1 cut(s)	780
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	171
CseI	GACGC	1 cut(s)	729
CsiI	ACCWGGT	1 cut(s)	694
Csp6I	GTAC	3 cut(s)	384, 598, 798
CviJI	RGCY	9 cut(s)	83, 125, 179, 250, 311, 453, 543, 778, 782
CviKI_1	RGCY	9 cut(s)	83, 125, 179, 250, 311, 453, 543, 778, 782
CviQI	GTAC	3 cut(s)	384, 598, 798
DdeI	CTNAG	4 cut(s)	145, 513, 533, 628
DpnI	GATC	6 cut(s)	390, 610, 644, 650, 702, 860
DpnII	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
Eam1104I	CTCTTC	2 cut(s)	65, 743
EarI	CTCTTC	2 cut(s)	65, 743
Eco130I	CCWWGG	1 cut(s)	306
Eco32I	GATATC	1 cut(s)	847
Eco57I	CTGAAG	3 cut(s)	96, 472, 861
EcoRII	CCWGG	3 cut(s)	565, 651, 694
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	734
FauNDI	CATATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	64
FspBI	CTAG	2 cut(s)	54, 126
GlaI	GCGC	1 cut(s)	170
GsuI	CTGGAG	2 cut(s)	142, 469
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	721
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	6 cut(s)	12, 91, 149, 241, 529, 818
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	4 cut(s)	236, 450, 682, 710
Hpy166II	GTNNAC	2 cut(s)	65, 680
Hpy188I	TCNGA	5 cut(s)	115, 148, 491, 534, 594
Hpy188III	TCNNGA	7 cut(s)	137, 392, 448, 614, 646, 763, 856
Hpy8I	GTNNAC	2 cut(s)	65, 680
HpyAV	CCTTC	2 cut(s)	426, 793
HpyCH4III	ACNGT	3 cut(s)	34, 367, 495
HpyCH4V	TGCA	7 cut(s)	99, 201, 297, 680, 748, 770, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 560, 788
HpyF3I	CTNAG	4 cut(s)	145, 513, 533, 628
Hsp92I	GRCGYC	1 cut(s)	721
HspAI	GCGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
LguI	GCTCTTC	1 cut(s)	743
LmnI	GCTCC	4 cut(s)	30, 80, 255, 450
LweI	GCATC	1 cut(s)	306
MabI	ACCWGGT	1 cut(s)	694
MaeI	CTAG	2 cut(s)	54, 126
MaeIII	GTNAC	2 cut(s)	456, 508
MalI	GATC	6 cut(s)	390, 610, 644, 650, 702, 860
MboI	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
MboII	GAAGA	7 cut(s)	82, 222, 330, 478, 629, 730, 854
MflI	RGATCY	3 cut(s)	608, 648, 858
MhlI	GDGCHC	2 cut(s)	291, 682
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	405, 528, 653, 752
Mph1103I	ATGCAT	1 cut(s)	772
MspA1I	CMGCKG	1 cut(s)	778
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	3 cut(s)	567, 653, 696
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	3 cut(s)	567, 653, 696
MwoI	GCNNNNNNNGC	3 cut(s)	105, 560, 788
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
NlaIV	GGNNCC	3 cut(s)	82, 452, 650
NmuCI	GTSAC	1 cut(s)	456
NsiI	ATGCAT	1 cut(s)	772
PagI	TCATGA	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	743
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	5 cut(s)	12, 91, 149, 241, 818
PfoI	TCCNGGA	1 cut(s)	651
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	3 cut(s)	565, 651, 694
PspGI	CCWGG	3 cut(s)	565, 651, 694
PspN4I	GGNNCC	3 cut(s)	82, 452, 650
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	3 cut(s)	608, 648, 858
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	3 cut(s)	385, 599, 799
RsaNI	GTAC	3 cut(s)	384, 598, 798
SapI	GCTCTTC	1 cut(s)	743
Sau3AI	GATC	6 cut(s)	388, 608, 642, 648, 700, 858
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	3 cut(s)	567, 653, 696
SduI	GDGCHC	2 cut(s)	291, 682
SexAI	ACCWGGT	1 cut(s)	694
SfaNI	GCATC	1 cut(s)	306
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	2 cut(s)	683, 727
SspMI	CTAG	2 cut(s)	54, 126
StyD4I	CCNGG	3 cut(s)	565, 651, 694
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	34, 367, 495
TasI	AATT	1 cut(s)	173
TatI	WGTACW	3 cut(s)	383, 597, 797
TfiI	GAWTC	5 cut(s)	12, 91, 149, 241, 818
TseFI	GTSAC	1 cut(s)	456
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	6 cut(s)	125, 153, 222, 272, 487, 721
VneI	GTGCAC	1 cut(s)	678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	2 cut(s)	54, 126
ZrmI	AGTACT	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.