Rw1G028190

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
55751659 .. 55755159
3501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028190.1

Sequence Viewer

Length: 1704 bp
ATGGACCCTCAATGTAAAAAACATGAAGAGCTTACATTAGAGAATACACCAACATGGGCAGTTGCTGTGGTCTGTTTTGTGTTGCTTGTAATATCAATTTCCATTGAGCATGTCCTAAACTTCATAGGAAAGTGGTTTAAAAGTAGACAAAAGCGTGCTCTCTATGAAGCTCTTGAGAAGCTCAAATCAGAGCTTATGCTGTTGGGATTCCTGTCCTTGCTCCTAACAGTTCTACAAGAACCAATCGCTGGTATATGTATACCGAAGAGTGTTGGAGCCACTTGGAATCCTTGCAATCATGGCACTTCAGATAGTAAGGCTAGAAAACTTCATGAATACTCAGATTCTGTCTTCAGTTTCCGGCGCAAATTAGCCAAAAAAGGAACTGATAAGTGCAAGGAGAAAGGTAAAGTTGCCTTTGTATCTTCATATGGGATTCACCAGCTCCATGTGTTTATCTTTGTGATAGCAGTTTTTCATGTGCTCTATTGCATCACAACCTTGGCTTTGGGAAGACACAAGATGAGAATATGGAAGCATTGGGAGAATGAGACAAAAACAGTTGAATACAAGTCCAGTACTGATCCAGAAAGGTTTAGGTATGCGAGGGATACATCATTCGGTAGAAGGCATTTGAACTTCTGGAGCCAGTCACCAGTTTTCCTTTGGTTTGTGTGCTTCTTCAGACAGTTCTTCAGGTCAGTTACTAAGACTGATTACCTGACTCTGAGGCATGGCTTTATCATGGCACATTTAGCACCTGGGAATGAAATGACCTTTGATTTTCGGAAGTACATAAGTAGATCTCTTGAAGATGACTTCTTAGTTATTGTTGAGATCAGTTCAATTATATGGTTCTCTGCAGTGTTGTTCCTGTTGTCTAGTGCATATGGATGGCATTCTTATCTCTGGCTGCCATTTATCTCCTTATTTATAATCCTCTTGGTGGGAACTAAACTACAAGTGATTATAACCATGATGGGGATGAGGATCCAAGAAAGAGGGGATGTGGTGATGGGTGCCCCGCTTGTTCAACCTGGTGATCACTACTTCTGGTTTGGACGCCCCCGCTTCATGCTCTTCCTCATCCACTTTGTTTTGTTCCAGAATGCATTTCAGCTGGCCTTCTTTGCGTGGAGTGCATGGGAGTTTGGCATACAGTCTTGCTTCCACCCAACCCCTGAAAGTATCGCCATCAGGATCTCAATGGGGGTTATCATACAAGTTTTATGTAGTTATGTGACTCTGCCGCTCTATGCTTTAGTGACACAGATGGGTTCTAGTATGAAACCCACTGTTTTTAATGAGGGAGTGGCAGAAGCAGTGAAAAGTTGGCATCACAAAGCAAAAAAGAAAGTAAAGCACAGCCTGCATTCAGAGAGAAGCACACCATTGCCAAGTAGACCTGGAACTCCTACACATGGCATGTCACCAGTTCATCTATTGCACAATGTCAACAACCGCAGTGATGAGGATGACTTGTTTCCACCTCCAGAAGCATCAATCGTCGTCGAAATGGAACATTTGGACACTGAAGGTTCACAAAAGAACAATGTTGGACCGAGTGAAAGAGGAGCAATTAGGCAAACTAGTACTGTTAGAGAATTAGGCCAAATTCATGAGCCTCCAGCTCCAAGCCCCTCTCAGGCTCAGCATGTAGTTAAAAGTCCGTCAAGCTTCTCATTTGGTACATCAAGAAAGTGA

Protein Analysis

567

Amino Acids

64.88

Weight (kDa)

9.36

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 12 - 485 5.1e-228 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 935, 971
AccB1I GGYRCC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 1252
AccI GTMKAC 3 cut(s) 145, 259, 1402
AciI CCGC 4 cut(s) 1025, 1069, 1250, 1462
AclWI GGATC 4 cut(s) 578, 985, 998, 1208
AcsI RAATTY 1 cut(s) 1614
AcuI CTGAAG 5 cut(s) 291, 337, 667, 679, 1554
AcyI GRCGYC 1 cut(s) 1063
AfaI GTAC 4 cut(s) 580, 794, 1594, 1690
AfiI CCNNNNNNNGG 5 cut(s) 248, 946, 981, 1421, 1645
AgsI TTSAA 5 cut(s) 566, 637, 812, 846, 1034
AhlI ACTAGT 1 cut(s) 1589
AjnI CCWGG 3 cut(s) 760, 1036, 1405
AluBI AGCT 8 cut(s) 31, 170, 181, 193, 445, 1120, 1631, 1677
AluI AGCT 8 cut(s) 31, 170, 181, 193, 445, 1120, 1631, 1677
Alw21I GWGCWC 2 cut(s) 160, 486
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 4 cut(s) 578, 985, 998, 1208
AlwNI CAGNNNCTG 2 cut(s) 65, 347
AoxI GGCC 2 cut(s) 1122, 1609
ApeKI GCWGC 1 cut(s) 913
ApoI RAATTY 1 cut(s) 1614
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 4, 1559
AsuHPI GGTGA 5 cut(s) 431, 645, 1024, 1052, 1422
AvaII GGWCC 2 cut(s) 4, 1559
BaeGI GKGCMC 1 cut(s) 1024
BamHI GGATCC 1 cut(s) 990
BanI GGYRCC 1 cut(s) 1019
BbsI GAAGAC 2 cut(s) 343, 520
Bbv12I GWGCWC 2 cut(s) 160, 486
BbvI GCAGC 1 cut(s) 900
BccI CCATC 5 cut(s) 888, 973, 1009, 1202, 1267
BciT130I CCWGG 3 cut(s) 762, 1038, 1407
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 1042
BcoDI GTCTC 1 cut(s) 545
BcuI ACTAGT 1 cut(s) 1589
BfaI CTAG 4 cut(s) 321, 882, 1281, 1590
BfmI CTRYAG 1 cut(s) 861
BfuI GTATCC 1 cut(s) 604
BglII AGATCT 1 cut(s) 803
BisI GCNGC 2 cut(s) 914, 1250
BlpI GCTNAGC 1 cut(s) 1650
BlsI GCNGC 2 cut(s) 915, 1251
BmcAI AGTACT 2 cut(s) 580, 1594
Bme1390I CCNGG 3 cut(s) 762, 1038, 1407
Bme18I GGWCC 2 cut(s) 4, 1559
BmgT120I GGNCC 2 cut(s) 4, 1559
BmiI GGNNCC 5 cut(s) 6, 277, 647, 992, 1021
BmrFI CCNGG 3 cut(s) 762, 1038, 1407
BmsI GCATC 3 cut(s) 501, 1345, 1508
BpiI GAAGAC 2 cut(s) 343, 520
BpmI CTGGAG 3 cut(s) 664, 1476, 1611
Bpu1102I GCTNAGC 1 cut(s) 1650
BpuEI CTTGAG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 989
BsaHI GRCGYC 1 cut(s) 1063
BsaJI CCNNGG 2 cut(s) 501, 761
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 946, 981, 1421, 1645
Bse1I ACTGG 4 cut(s) 576, 649, 656, 1433
Bse3DI GCAATG 1 cut(s) 1391
Bse8I GATNNNNATC 1 cut(s) 989
BseBI CCWGG 3 cut(s) 762, 1038, 1407
BseDI CCNNGG 2 cut(s) 501, 761
BseGI GGATG 5 cut(s) 899, 990, 1012, 1086, 1480
BseJI GATNNNNATC 1 cut(s) 989
BseLI CCNNNNNNNGG 5 cut(s) 248, 946, 981, 1421, 1645
BseMI GCAATG 1 cut(s) 1391
BseMII CTCAG 4 cut(s) 354, 719, 1658, 1664
BseNI ACTGG 4 cut(s) 576, 649, 656, 1433
BseRI GAGGAG 1 cut(s) 1587
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 1 cut(s) 900
BshFI GGCC 2 cut(s) 1124, 1611
BshNI GGYRCC 1 cut(s) 1019
BsiHKAI GWGCWC 2 cut(s) 160, 486
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 5 cut(s) 248, 946, 981, 1421, 1645
BsmAI GTCTC 1 cut(s) 545
BsmI GAATGC 3 cut(s) 898, 1114, 1372
BsnI GGCC 2 cut(s) 1124, 1611
Bsp1286I GDGCHC 3 cut(s) 160, 486, 1024
Bsp143I GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
Bsp1720I GCTNAGC 1 cut(s) 1650
BspACI CCGC 4 cut(s) 1025, 1069, 1250, 1462
BspANI GGCC 2 cut(s) 1124, 1611
BspCNI CTCAG 4 cut(s) 353, 720, 1657, 1663
BspHI TCATGA 2 cut(s) 331, 1618
BspLI GGNNCC 5 cut(s) 6, 277, 647, 992, 1021
BspMAI CTGCAG 1 cut(s) 865
BspPI GGATC 4 cut(s) 578, 985, 998, 1208
BspQI GCTCTTC 2 cut(s) 21, 1085
BspT107I GGYRCC 1 cut(s) 1019
BsrBI CCGCTC 1 cut(s) 1252
BsrDI GCAATG 1 cut(s) 1391
BsrI ACTGG 4 cut(s) 576, 649, 656, 1433
BssECI CCNNGG 2 cut(s) 501, 761
BssMI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
BssNAI GTATAC 1 cut(s) 260
BssNI GRCGYC 1 cut(s) 1063
BssT1I CCWWGG 1 cut(s) 501
Bst1107I GTATAC 1 cut(s) 260
Bst2UI CCWGG 3 cut(s) 762, 1038, 1407
Bst4CI ACNGT 6 cut(s) 229, 562, 690, 1161, 1297, 1597
Bst6I CTCTTC 3 cut(s) 21, 260, 1085
BstACI GRCGYC 1 cut(s) 1063
BstAPI GCANNNNNTGC 1 cut(s) 1369
BstC8I GCNNGC 3 cut(s) 156, 1122, 1370
BstDEI CTNAG 6 cut(s) 340, 708, 728, 823, 1644, 1650
BstF5I GGATG 5 cut(s) 899, 990, 1012, 1086, 1480
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 6 cut(s) 586, 806, 840, 993, 1045, 1203
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
BstMWI GCNNNNNNNGC 5 cut(s) 300, 755, 1130, 1139, 1369
BstNI CCWGG 3 cut(s) 762, 1038, 1407
BstNSI RCATGY 3 cut(s) 113, 1429, 1658
BstSCI CCNGG 3 cut(s) 760, 1036, 1405
BstSFI CTRYAG 1 cut(s) 861
BstSLI GKGCMC 1 cut(s) 1024
BstV1I GCAGC 1 cut(s) 900
BstV2I GAAGAC 2 cut(s) 343, 520
BstX2I RGATCY 3 cut(s) 803, 990, 1200
BstYI RGATCY 3 cut(s) 803, 990, 1200
BstZ17I GTATAC 1 cut(s) 260
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 2 cut(s) 1124, 1611
BtsCI GGATG 5 cut(s) 899, 990, 1012, 1086, 1480
BtsI GCAGTG 3 cut(s) 870, 1329, 1471
BtsIMutI CAGTG 5 cut(s) 870, 1293, 1329, 1471, 1530
Cac8I GCNNGC 3 cut(s) 156, 1122, 1370
CaiI CAGNNNCTG 2 cut(s) 65, 347
CciI TCATGA 2 cut(s) 331, 1618
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 4, 1559
CseI GACGC 1 cut(s) 1071
CsiI ACCWGGT 1 cut(s) 1036
Csp6I GTAC 4 cut(s) 579, 793, 1593, 1689
CviQI GTAC 4 cut(s) 579, 793, 1593, 1689
DdeI CTNAG 6 cut(s) 340, 708, 728, 823, 1644, 1650
DpnI GATC 6 cut(s) 585, 805, 839, 992, 1044, 1202
DpnII GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
DraI TTTAAA 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 21, 260, 1085
EarI CTCTTC 3 cut(s) 21, 260, 1085
Eco130I CCWWGG 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 4, 1559
Eco57I CTGAAG 5 cut(s) 291, 337, 667, 679, 1554
EcoRII CCWGG 3 cut(s) 760, 1036, 1405
EcoT14I CCWWGG 1 cut(s) 501
EcoT22I ATGCAT 1 cut(s) 1114
ErhI CCWWGG 1 cut(s) 501
FauI CCCGC 2 cut(s) 1032, 1076
FauNDI CATATG 2 cut(s) 430, 889
FbaI TGATCA 1 cut(s) 1042
FblI GTMKAC 3 cut(s) 145, 259, 1402
Fnu4HI GCNGC 2 cut(s) 914, 1250
FokI GGATG 5 cut(s) 906, 997, 1019, 1073, 1487
Fsp4HI GCNGC 2 cut(s) 914, 1250
FspBI CTAG 4 cut(s) 321, 882, 1281, 1590
GlaI GCGC 1 cut(s) 365
GluI GCNGC 2 cut(s) 914, 1250
GsuI CTGGAG 3 cut(s) 664, 1476, 1611
HaeIII GGCC 2 cut(s) 1124, 1611
HapII CCGG 1 cut(s) 361
HgaI GACGC 1 cut(s) 1071
HhaI GCGC 1 cut(s) 366
Hin1I GRCGYC 1 cut(s) 1063
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HincII GTYRAC 1 cut(s) 1456
HindII GTYRAC 1 cut(s) 1456
HindIII AAGCTT 1 cut(s) 1675
HinfI GANTC 6 cut(s) 207, 286, 344, 436, 724, 1243
HpaII CCGG 1 cut(s) 361
HphI GGTGA 5 cut(s) 431, 645, 1024, 1052, 1422
Hpy166II GTNNAC 5 cut(s) 146, 260, 1403, 1456, 1541
Hpy188I TCNGA 7 cut(s) 190, 310, 343, 686, 729, 789, 1378
Hpy8I GTNNAC 5 cut(s) 146, 260, 1403, 1456, 1541
Hpy99I CGWCG 2 cut(s) 1511, 1514
HpyAV CCTTC 3 cut(s) 621, 1135, 1529
HpyCH4III ACNGT 6 cut(s) 229, 562, 690, 1161, 1297, 1597
HpyCH4V TGCA 9 cut(s) 294, 396, 492, 863, 887, 1112, 1142, 1372, 1447
HpyF10VI GCNNNNNNNGC 5 cut(s) 300, 755, 1130, 1139, 1369
HpyF3I CTNAG 6 cut(s) 340, 708, 728, 823, 1644, 1650
Hsp92I GRCGYC 1 cut(s) 1063
HspAI GCGC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 1042
Kzo9I GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
LguI GCTCTTC 2 cut(s) 21, 1085
LmnI GCTCC 6 cut(s) 225, 275, 450, 645, 1574, 1636
Lsp1109I GCAGC 1 cut(s) 900
LweI GCATC 3 cut(s) 501, 1345, 1508
MabI ACCWGGT 1 cut(s) 1036
MaeI CTAG 4 cut(s) 321, 882, 1281, 1590
MaeIII GTNAC 5 cut(s) 651, 703, 1240, 1264, 1428
MalI GATC 6 cut(s) 585, 805, 839, 992, 1044, 1202
MbiI CCGCTC 1 cut(s) 1252
MboI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
MboII GAAGA 9 cut(s) 38, 277, 343, 417, 525, 673, 685, 824, 1072
MflI RGATCY 3 cut(s) 803, 990, 1200
MhlI GDGCHC 3 cut(s) 160, 486, 1024
MluCI AATT 6 cut(s) 96, 368, 846, 1578, 1604, 1614
MlyI GAGTC 2 cut(s) 718, 1237
MmeI TCCRAC 2 cut(s) 253, 1537
Mph1103I ATGCAT 1 cut(s) 1114
MseI TTAA 3 cut(s) 138, 1302, 1662
MslI CAYNNNNRTG 2 cut(s) 52, 892
MspA1I CMGCKG 1 cut(s) 1120
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 3 cut(s) 762, 1038, 1407
Mva1269I GAATGC 3 cut(s) 898, 1114, 1372
MvaI CCWGG 3 cut(s) 762, 1038, 1407
MwoI GCNNNNNNNGC 5 cut(s) 300, 755, 1130, 1139, 1369
NdeI CATATG 2 cut(s) 430, 889
NdeII GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
NlaIV GGNNCC 5 cut(s) 6, 277, 647, 992, 1021
NmuCI GTSAC 4 cut(s) 651, 1240, 1264, 1428
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 3 cut(s) 113, 1429, 1658
PagI TCATGA 2 cut(s) 331, 1618
PciSI GCTCTTC 2 cut(s) 21, 1085
PctI GAATGC 3 cut(s) 898, 1114, 1372
PfeI GAWTC 4 cut(s) 207, 286, 344, 436
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 2 cut(s) 915, 1251
PleI GAGTC 2 cut(s) 718, 1237
PpsI GAGTC 2 cut(s) 718, 1237
PsiI TTATAA 2 cut(s) 935, 971
Psp6I CCWGG 3 cut(s) 760, 1036, 1405
PspGI CCWGG 3 cut(s) 760, 1036, 1405
PspN4I GGNNCC 5 cut(s) 6, 277, 647, 992, 1021
PspPI GGNCC 2 cut(s) 4, 1559
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 2 cut(s) 65, 347
PsuI RGATCY 3 cut(s) 803, 990, 1200
PvuII CAGCTG 1 cut(s) 1120
RsaI GTAC 4 cut(s) 580, 794, 1594, 1690
RsaNI GTAC 4 cut(s) 579, 793, 1593, 1689
RseI CAYNNNNRTG 2 cut(s) 52, 892
SapI GCTCTTC 2 cut(s) 21, 1085
SaqAI TTAA 3 cut(s) 138, 1302, 1662
SatI GCNGC 2 cut(s) 914, 1250
Sau3AI GATC 6 cut(s) 583, 803, 837, 990, 1042, 1200
Sau96I GGNCC 2 cut(s) 4, 1559
ScaI AGTACT 2 cut(s) 580, 1594
SchI GAGTC 2 cut(s) 718, 1237
ScrFI CCNGG 3 cut(s) 762, 1038, 1407
SduI GDGCHC 3 cut(s) 160, 486, 1024
SexAI ACCWGGT 1 cut(s) 1036
SfaNI GCATC 3 cut(s) 501, 1345, 1508
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 2 cut(s) 4, 1559
SmiMI CAYNNNNRTG 2 cut(s) 52, 892
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SpeI ACTAGT 1 cut(s) 1589
Sse9I AATT 6 cut(s) 96, 368, 846, 1578, 1604, 1614
SsiI CCGC 4 cut(s) 1025, 1069, 1250, 1462
SspMI CTAG 4 cut(s) 321, 882, 1281, 1590
StyD4I CCNGG 3 cut(s) 760, 1036, 1405
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 6 cut(s) 229, 562, 690, 1161, 1297, 1597
TaqI TCGA 1 cut(s) 1512
TaqII GACCGA 1 cut(s) 1576
TasI AATT 6 cut(s) 96, 368, 846, 1578, 1604, 1614
TatI WGTACW 3 cut(s) 578, 792, 1592
TauI GCSGC 1 cut(s) 1252
TfiI GAWTC 4 cut(s) 207, 286, 344, 436
Tru1I TTAA 3 cut(s) 138, 1302, 1662
Tru9I TTAA 3 cut(s) 138, 1302, 1662
TscAI CASTG 5 cut(s) 870, 1300, 1329, 1471, 1537
TseFI GTSAC 4 cut(s) 651, 1240, 1264, 1428
TseI GCWGC 1 cut(s) 913
Tsp45I GTSAC 4 cut(s) 651, 1240, 1264, 1428
TspGWI ACGGA 1 cut(s) 1659
TspRI CASTG 5 cut(s) 870, 1300, 1329, 1471, 1537
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 4, 1559
XapI RAATTY 1 cut(s) 1614
XceI RCATGY 3 cut(s) 113, 1429, 1658
XcmI CCANNNNNNNNNTGG 1 cut(s) 663
XmiI GTMKAC 3 cut(s) 145, 259, 1402
XspI CTAG 4 cut(s) 321, 882, 1281, 1590
ZrmI AGTACT 2 cut(s) 580, 1594
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.