Rmu_ssc0000479.1_g000001

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000479.1
Physical Location & Seq
Forward (+)
28 .. 6763
6736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000479.1_g000001.1.cds

Sequence Viewer

Length: 1767 bp
atgggttcagagcttatgctattggggtttatatcgctgctgctgacggtggggcaaggtccgatatcgaacatatgcatatcgaagaaagtgggaaacacgtggcatccgtgtagcaagaagcaggaggataagatcgtggaagaagaagaagaggttgaaagcccaagtaggaaactgctggcagcgtttgaatctggttatggaggtggaagcgcacgccgcgttttggctgctgcgggcaccgacaaatgtgcagccaagggaaaagttccattcatatctgcggatggtattcatcaactgcatatatttatcttcgtcttggctgttttccacgtactctattgcattctcactatggctttaggaagagccaagatgagaagttggaagaggtgggaaaaagaaactagaacggctgaatatcaattttcacacgatccagagcggttcagatttgcaagggacacatcttttgggagaagacatttaagttactggaccaaaacaccttttctcatgtggattgtttgttttttcagacaatttgttagatcagttcccaaagttgattacttgaccttgcggcacgggtttatcatggcacatttggcacctcaaagccaccaaaaattcaatttccaaaagtacataaacagatcactcgaagaggatttcaaggtggtagtgggaatcagccctccaatttggggttttgccgtggtctttctactctttaatactcatggctggtattcttatctttggctaccctttatcccactaattatcattctattggtgggaaccaaactacaagtgatcataaccaaaatgggtcttagaatccaagaaagaggagaagttgtgaagggtacaccagttgttcaacctggtgatgacctcttctggtttaaccgccctcgcctcattctctacctcatcaacttcgttctctttcagaatgccttccaacttgcgttctttgcatggagttggtatgaattttctttgaaatcttgctttcacgagcatactgaggatatcatcatcagagtttcaatgggggtcctcatacaaattctctgcagttatgtcactctcccactttatgcccttgtcacacagatgggctctactatgaaaccaacaatattcaacgagagagtagccacagctctacgcaactggcatcacacggctaagaagcacatcaaacagaacaaaggctccgtaaccccaatgtctagcagaccaggcactccatcccaccatgcttcccccatccacctcctccggcattaccgcagcgaggtggacagcttccacacatcaccgagaagatcaaactttgaagttgaacaacgttatgaaaccgactcaccctccccctcgcaccacctccacatagatggttcgttctctcaccaacaccaagtcgaagtagggaacatggaacatgatcgggtggatgccaacgaacccaactcggtccatgcggctcccgctagcgttagagttgcattgccattagaggttgatggttacagcgaccatgacgatgatgattacaaccacgacggcgatgctataattggagacacttggatagccatagattttgcataccttggcgttccccttgcttcactgggtgtatcggtggcagtagtactggcagtcggctcgcgaggagactgggactggaagtacggtcgccgggttgatctggtgaggctgacagtcggctcgcgaggagactag

Protein Analysis

588

Amino Acids

67.03

Weight (kDa)

8.65

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 616
AccBSI CCGCTC 1 cut(s) 451
AccII CGCG 3 cut(s) 225, 1693, 1756
AciI CCGC 9 cut(s) 223, 239, 287, 451, 589, 922, 1309, 1502, 1509
AclI AACGTT 1 cut(s) 1369
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 3 cut(s) 635, 1007, 1083
AcvI CACGTG 1 cut(s) 102
AdeI CACNNNGTG 1 cut(s) 1658
AfaI GTAC 5 cut(s) 342, 653, 880, 1677, 1715
AfiI CCNNNNNNNGG 3 cut(s) 229, 713, 1315
AflIII ACRYGT 1 cut(s) 99
AjnI CCWGG 2 cut(s) 895, 1258
AloI GAACNNNNNNTCC 2 cut(s) 1217, 1249
AluBI AGCT 3 cut(s) 13, 1181, 1326
AluI AGCT 3 cut(s) 13, 1181, 1326
Alw26I GTCTC 3 cut(s) 1596, 1692, 1755
AlwI GGATC 1 cut(s) 437
ApeKI GCWGC 7 cut(s) 37, 40, 185, 233, 236, 257, 1311
ApoI RAATTY 3 cut(s) 635, 1007, 1083
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
Asp700I GAANNNNTTC 1 cut(s) 971
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 4 cut(s) 59, 504, 1072, 1495
AsuC2I CCSGG 1 cut(s) 1724
AsuHPI GGTGA 5 cut(s) 911, 1329, 1377, 1421, 1747
AsuNHI GCTAGC 1 cut(s) 1511
AvaII GGWCC 4 cut(s) 59, 504, 1072, 1495
BaeGI GKGCMC 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 870, 903
BanI GGYRCC 2 cut(s) 242, 616
BanII GRGCYC 1 cut(s) 1139
BauI CACGAG 1 cut(s) 1031
BbrPI CACGTG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 493
BbvI GCAGC 7 cut(s) 24, 27, 197, 220, 223, 269, 1323
BccI CCATC 6 cut(s) 284, 1126, 1276, 1295, 1409, 1538
BceAI ACGGC 4 cut(s) 435, 707, 1218, 1600
BcgI CGANNNNNNTGC 6 cut(s) 236, 270, 1571, 1605, 1671, 1705
BciT130I CCWGG 2 cut(s) 897, 1260
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 1 cut(s) 1724
BcoDI GTCTC 3 cut(s) 1596, 1692, 1755
BfaI CTAG 4 cut(s) 414, 1251, 1512, 1765
BfmI CTRYAG 1 cut(s) 1090
BmcAI AGTACT 1 cut(s) 1677
Bme1390I CCNGG 3 cut(s) 897, 1260, 1724
Bme18I GGWCC 4 cut(s) 59, 504, 1072, 1495
BmgT120I GGNCC 4 cut(s) 59, 504, 1072, 1495
BmiI GGNNCC 6 cut(s) 244, 618, 811, 1073, 1234, 1506
BmrFI CCNGG 3 cut(s) 897, 1260, 1724
BmrI ACTGGG 2 cut(s) 1664, 1711
BmsI GCATC 4 cut(s) 115, 1204, 1465, 1579
BmtI GCTAGC 1 cut(s) 1515
BmuI ACTGGG 2 cut(s) 1664, 1711
BpiI GAAGAC 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 1724
BsaAI YACGTR 2 cut(s) 102, 340
BsaJI CCNNGG 3 cut(s) 261, 723, 1633
BsaXI ACNNNNNCTCC 6 cut(s) 855, 885, 1217, 1247, 1373, 1403
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 713, 1315
Bse1I ACTGG 7 cut(s) 506, 884, 1196, 1659, 1683, 1706, 1712
Bse3DI GCAATG 1 cut(s) 1526
BseBI CCWGG 2 cut(s) 897, 1260
BseDI CCNNGG 3 cut(s) 261, 723, 1633
BseGI GGATG 5 cut(s) 106, 295, 1268, 1287, 1480
BseLI CCNNNNNNNGG 3 cut(s) 229, 713, 1315
BseMI GCAATG 1 cut(s) 1526
BseMII CTCAG 1 cut(s) 1032
BseNI ACTGG 7 cut(s) 506, 884, 1196, 1659, 1683, 1706, 1712
BseRI GAGGAG 3 cut(s) 876, 1286, 1710
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 7 cut(s) 24, 27, 197, 220, 223, 269, 1323
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 3 cut(s) 225, 1693, 1756
Bsh1285I CGRYCG 1 cut(s) 1720
BshNI GGYRCC 2 cut(s) 242, 616
BsiEI CGRYCG 1 cut(s) 1720
BsiSI CCGG 2 cut(s) 1300, 1723
BslFI GGGAC 2 cut(s) 482, 1718
BslI CCNNNNNNNGG 3 cut(s) 229, 713, 1315
BsmAI GTCTC 3 cut(s) 1596, 1692, 1755
BsmFI GGGAC 2 cut(s) 482, 1718
BsmI GAATGC 2 cut(s) 351, 973
Bsp1286I GDGCHC 2 cut(s) 245, 1139
Bsp143I GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
Bsp68I TCGCGA 2 cut(s) 1693, 1756
BspACI CCGC 9 cut(s) 223, 239, 287, 451, 589, 922, 1309, 1502, 1509
BspCNI CTCAG 1 cut(s) 1033
BspFNI CGCG 3 cut(s) 225, 1693, 1756
BspLI GGNNCC 6 cut(s) 244, 618, 811, 1073, 1234, 1506
BspMAI CTGCAG 1 cut(s) 1094
BspOI GCTAGC 1 cut(s) 1515
BspPI GGATC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 367
BspT107I GGYRCC 2 cut(s) 242, 616
BsrBI CCGCTC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 1526
BsrI ACTGG 7 cut(s) 506, 884, 1196, 1659, 1683, 1706, 1712
BssECI CCNNGG 3 cut(s) 261, 723, 1633
BssMI GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
BssSI CACGAG 1 cut(s) 1031
BssT1I CCWWGG 2 cut(s) 261, 1633
Bst2BI CACGAG 1 cut(s) 1031
Bst2UI CCWGG 2 cut(s) 897, 1260
Bst4CI ACNGT 3 cut(s) 49, 1718, 1747
Bst6I CTCTTC 5 cut(s) 147, 367, 389, 666, 914
BstBAI YACGTR 2 cut(s) 102, 340
BstC8I GCNNGC 6 cut(s) 183, 220, 241, 1513, 1691, 1754
BstDEI CTNAG 3 cut(s) 845, 1041, 1206
BstDSI CCRYGG 1 cut(s) 723
BstF5I GGATG 5 cut(s) 106, 295, 1268, 1287, 1480
BstFNI CGCG 3 cut(s) 225, 1693, 1756
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 8 cut(s) 138, 445, 560, 665, 828, 1349, 1468, 1732
BstMAI GTCTC 3 cut(s) 1596, 1692, 1755
BstMBI GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
BstMCI CGRYCG 1 cut(s) 1720
BstMWI GCNNNNNNNGC 5 cut(s) 222, 614, 989, 1260, 1508
BstNI CCWGG 2 cut(s) 897, 1260
BstSCI CCNGG 3 cut(s) 895, 1258, 1722
BstSFI CTRYAG 1 cut(s) 1090
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 3 cut(s) 225, 1693, 1756
BstV1I GCAGC 7 cut(s) 24, 27, 197, 220, 223, 269, 1323
BstV2I GAAGAC 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 1415
BtgI CCRYGG 1 cut(s) 723
BtgZI GCGATG 1 cut(s) 1602
BtsCI GGATG 5 cut(s) 106, 295, 1268, 1287, 1480
BtsIMutI CAGTG 1 cut(s) 1652
BtuMI TCGCGA 2 cut(s) 1693, 1756
Cac8I GCNNGC 6 cut(s) 183, 220, 241, 1513, 1691, 1754
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 4 cut(s) 59, 504, 1072, 1495
CsiI ACCWGGT 1 cut(s) 895
Csp6I GTAC 5 cut(s) 341, 652, 879, 1676, 1714
CviAII CATG 9 cut(s) 523, 604, 749, 993, 1277, 1456, 1463, 1499, 1559
CviQI GTAC 5 cut(s) 341, 652, 879, 1676, 1714
DdeI CTNAG 3 cut(s) 845, 1041, 1206
DpnI GATC 8 cut(s) 137, 444, 559, 664, 827, 1348, 1467, 1731
DpnII GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
DraIII CACNNNGTG 1 cut(s) 1658
Eam1104I CTCTTC 5 cut(s) 147, 367, 389, 666, 914
EarI CTCTTC 5 cut(s) 147, 367, 389, 666, 914
Eco130I CCWWGG 2 cut(s) 261, 1633
Eco24I GRGCYC 1 cut(s) 1139
Eco32I GATATC 2 cut(s) 66, 1048
Eco47I GGWCC 4 cut(s) 59, 504, 1072, 1495
Eco72I CACGTG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 1072
EcoRII CCWGG 2 cut(s) 895, 1258
EcoRV GATATC 2 cut(s) 66, 1048
EcoT14I CCWWGG 2 cut(s) 261, 1633
EcoT22I ATGCAT 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 1139
ErhI CCWWGG 2 cut(s) 261, 1633
FaeI CATG 9 cut(s) 526, 607, 752, 996, 1280, 1459, 1466, 1502, 1562
FaqI GGGAC 2 cut(s) 482, 1718
FatI CATG 9 cut(s) 522, 603, 748, 992, 1276, 1455, 1462, 1498, 1558
FauI CCCGC 2 cut(s) 232, 1516
FauNDI CATATG 1 cut(s) 74
FbaI TGATCA 1 cut(s) 825
FokI GGATG 5 cut(s) 93, 302, 1255, 1274, 1487
FriOI GRGCYC 1 cut(s) 1139
FspBI CTAG 4 cut(s) 414, 1251, 1512, 1765
GlaI GCGC 1 cut(s) 217
HapII CCGG 2 cut(s) 1300, 1723
HhaI GCGC 1 cut(s) 218
Hin1II CATG 9 cut(s) 526, 607, 752, 996, 1280, 1459, 1466, 1502, 1562
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 4 cut(s) 194, 696, 849, 1382
HpaII CCGG 2 cut(s) 1300, 1723
HphI GGTGA 5 cut(s) 911, 1329, 1377, 1421, 1747
Hpy166II GTNNAC 2 cut(s) 881, 1321
Hpy188I TCNGA 6 cut(s) 10, 63, 458, 545, 966, 1058
Hpy188III TCNNGA 4 cut(s) 446, 1031, 1692, 1755
Hpy8I GTNNAC 2 cut(s) 881, 1321
Hpy99I CGWCG 1 cut(s) 1586
HpyAV CCTTC 2 cut(s) 868, 982
HpyCH4III ACNGT 3 cut(s) 49, 1718, 1747
HpyCH4IV ACGT 3 cut(s) 101, 339, 1369
HpyCH4V TGCA 9 cut(s) 78, 257, 307, 351, 464, 992, 1092, 1526, 1628
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 614, 989, 1260, 1508
HpyF3I CTNAG 3 cut(s) 845, 1041, 1206
HpySE526I ACGT 3 cut(s) 101, 339, 1369
Hsp92II CATG 9 cut(s) 526, 607, 752, 996, 1280, 1459, 1466, 1502, 1562
HspAI GCGC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
LguI GCTCTTC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 1238, 1510
Lsp1109I GCAGC 7 cut(s) 24, 27, 197, 220, 223, 269, 1323
LweI GCATC 4 cut(s) 115, 1204, 1465, 1579
MabI ACCWGGT 1 cut(s) 895
MaeI CTAG 4 cut(s) 414, 1251, 1512, 1765
MaeII ACGT 3 cut(s) 101, 339, 1369
MaeIII GTNAC 5 cut(s) 497, 1099, 1123, 1237, 1547
MalI GATC 8 cut(s) 137, 444, 559, 664, 827, 1348, 1467, 1731
MbiI CCGCTC 1 cut(s) 451
MboI GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
MhlI GDGCHC 2 cut(s) 245, 1139
MluCI AATT 9 cut(s) 431, 548, 635, 640, 708, 789, 1007, 1083, 1596
MlyI GAGTC 1 cut(s) 1376
MmeI TCCRAC 2 cut(s) 371, 1000
Mph1103I ATGCAT 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 971
MseI TTAA 3 cut(s) 494, 741, 918
MslI CAYNNNNRTG 3 cut(s) 1130, 1413, 1563
MspI CCGG 2 cut(s) 1300, 1723
MspR9I CCNGG 3 cut(s) 897, 1260, 1724
Mva1269I GAATGC 2 cut(s) 351, 973
MvaI CCWGG 2 cut(s) 897, 1260
MvnI CGCG 3 cut(s) 225, 1693, 1756
MwoI GCNNNNNNNGC 5 cut(s) 222, 614, 989, 1260, 1508
NciI CCSGG 1 cut(s) 1724
NdeI CATATG 1 cut(s) 74
NdeII GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
NheI GCTAGC 1 cut(s) 1511
NlaIII CATG 9 cut(s) 526, 607, 752, 996, 1280, 1459, 1466, 1502, 1562
NlaIV GGNNCC 6 cut(s) 244, 618, 811, 1073, 1234, 1506
NmuCI GTSAC 2 cut(s) 1099, 1123
NruI TCGCGA 2 cut(s) 1693, 1756
NsiI ATGCAT 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 2 cut(s) 351, 973
PdmI GAANNNNTTC 1 cut(s) 971
PfeI GAWTC 3 cut(s) 194, 696, 849
PleI GAGTC 1 cut(s) 1376
PmaCI CACGTG 1 cut(s) 102
PmlI CACGTG 1 cut(s) 102
PpsI GAGTC 1 cut(s) 1376
Ppu21I YACGTR 2 cut(s) 102, 340
PpuMI RGGWCCY 1 cut(s) 1072
Psp1406I AACGTT 1 cut(s) 1369
Psp5II RGGWCCY 1 cut(s) 1072
Psp6I CCWGG 2 cut(s) 895, 1258
PspCI CACGTG 1 cut(s) 102
PspGI CCWGG 2 cut(s) 895, 1258
PspN4I GGNNCC 6 cut(s) 244, 618, 811, 1073, 1234, 1506
PspPI GGNCC 4 cut(s) 59, 504, 1072, 1495
PspPPI RGGWCCY 1 cut(s) 1072
PstI CTGCAG 1 cut(s) 1094
RruI TCGCGA 2 cut(s) 1693, 1756
RsaI GTAC 5 cut(s) 342, 653, 880, 1677, 1715
RsaNI GTAC 5 cut(s) 341, 652, 879, 1676, 1714
RseI CAYNNNNRTG 3 cut(s) 1130, 1413, 1563
SapI GCTCTTC 1 cut(s) 367
SaqAI TTAA 3 cut(s) 494, 741, 918
Sau3AI GATC 8 cut(s) 135, 442, 557, 662, 825, 1346, 1465, 1729
Sau96I GGNCC 4 cut(s) 59, 504, 1072, 1495
ScaI AGTACT 1 cut(s) 1677
SchI GAGTC 1 cut(s) 1376
ScrFI CCNGG 3 cut(s) 897, 1260, 1724
SduI GDGCHC 2 cut(s) 245, 1139
SexAI ACCWGGT 1 cut(s) 895
SfaNI GCATC 4 cut(s) 115, 1204, 1465, 1579
SfcI CTRYAG 1 cut(s) 1090
SinI GGWCC 4 cut(s) 59, 504, 1072, 1495
SmiMI CAYNNNNRTG 3 cut(s) 1130, 1413, 1563
Sse9I AATT 9 cut(s) 431, 548, 635, 640, 708, 789, 1007, 1083, 1596
SsiI CCGC 9 cut(s) 223, 239, 287, 451, 589, 922, 1309, 1502, 1509
SspI AATATT 1 cut(s) 1158
SspMI CTAG 4 cut(s) 414, 1251, 1512, 1765
StyD4I CCNGG 3 cut(s) 895, 1258, 1722
StyI CCWWGG 2 cut(s) 261, 1633
TaaI ACNGT 3 cut(s) 49, 1718, 1747
TaiI ACGT 3 cut(s) 104, 342, 1372
TaqI TCGA 4 cut(s) 68, 83, 669, 1443
TaqII GACCGA 1 cut(s) 1483
TasI AATT 9 cut(s) 431, 548, 635, 640, 708, 789, 1007, 1083, 1596
TatI WGTACW 2 cut(s) 651, 1675
TauI GCSGC 3 cut(s) 225, 592, 1505
TfiI GAWTC 3 cut(s) 194, 696, 849
Tru1I TTAA 3 cut(s) 494, 741, 918
Tru9I TTAA 3 cut(s) 494, 741, 918
TscAI CASTG 1 cut(s) 1659
TseFI GTSAC 2 cut(s) 1099, 1123
TseI GCWGC 7 cut(s) 37, 40, 185, 233, 236, 257, 1311
Tsp45I GTSAC 2 cut(s) 1099, 1123
TspDTI ATGAA 5 cut(s) 268, 287, 1020, 1160, 1389
TspGWI ACGGA 2 cut(s) 99, 1225
TspRI CASTG 1 cut(s) 1659
VpaK11BI GGWCC 4 cut(s) 59, 504, 1072, 1495
XapI RAATTY 3 cut(s) 635, 1007, 1083
XmnI GAANNNNTTC 1 cut(s) 971
XspI CTAG 4 cut(s) 414, 1251, 1512, 1765
ZrmI AGTACT 1 cut(s) 1677
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.