Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

16779552 .. 16780368

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCGTCTCAACAAGAGAAGAAGCAGCTGGATGAGAGGGCAAAGAAGGGCGAGACCGTCGTGCCAGGTGGTACGGGAGGCAAAAGCTTCGAAGCTCAACAGCATCTCGCTGAAGGGAGGAGCCGAGGAGGGCAAACTCGAAAGGAGCAGTTAGGAACTGAAGGATATCAGCAGATGGGACGCAAAGGTGGTCTTAGCACCGGAGACAAGCCTGGTGGGGAACACGCTGAGGAGGAAGGAGTCGAGATAGACGAATCCAAATTCAGGACCAAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0021700 GO:0022414 GO:0022611 GO:0031647 GO:0032501 GO:0032502 GO:0032504 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048856 GO:0050821 GO:0050896 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0097159 GO:0097305 GO:0097439 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

92

Amino Acids

9.93

Weight (kDa)

6.75

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	2 - 59	1.1e-25	Small hydrophilic plant seed protein
LEA_5	PF00477	42 - 88	5.6e-20	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	2 cut(s)	132, 180
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	264
AjnI	CCWGG	2 cut(s)	64, 211
AluBI	AGCT	3 cut(s)	28, 87, 95
AluI	AGCT	3 cut(s)	28, 87, 95
Alw26I	GTCTC	3 cut(s)	12, 47, 198
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	267
AsuII	TTCGAA	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	2 cut(s)	66, 213
BcoDI	GTCTC	3 cut(s)	12, 47, 198
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	66, 213
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	66, 213
BmsI	GCATC	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	66, 213
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	3 cut(s)	133, 141, 245
BseXI	GCAGC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	3 cut(s)	12, 47, 198
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	124
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	66, 213
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	194, 228
BstF5I	GGATG	1 cut(s)	37
BstMAI	GTCTC	3 cut(s)	12, 47, 198
BstNI	CCWGG	2 cut(s)	66, 213
BstSCI	CCNGG	2 cut(s)	64, 211
BstV1I	GCAGC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	267
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	72
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviJI	RGCY	5 cut(s)	28, 87, 95, 123, 211
CviKI_1	RGCY	5 cut(s)	28, 87, 95, 123, 211
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	194, 228
Eco31I	GGTCTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	2 cut(s)	132, 180
EcoRII	CCWGG	2 cut(s)	64, 211
EcoRV	GATATC	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	12
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	2 cut(s)	240, 254
HpaII	CCGG	1 cut(s)	201
Hpy188III	TCNNGA	2 cut(s)	244, 265
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	4 cut(s)	40, 107, 155, 230
HpyCH4III	ACNGT	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	194, 228
Hsp92I	GRCGYC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	120, 145
LpnPI	CCDG	7 cut(s)	14, 51, 78, 198, 214, 225, 250
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	7 cut(s)	30, 71, 111, 119, 122, 223, 226
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	66, 213
MvaI	CCWGG	2 cut(s)	66, 213
NlaIV	GGNNCC	1 cut(s)	122
NmeAIII	GCCGAG	1 cut(s)	149
NspV	TTCGAA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	2 cut(s)	64, 211
PspGI	CCWGG	2 cut(s)	64, 211
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SatI	GCNGC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	66, 213
SetI	ASST	6 cut(s)	30, 70, 89, 97, 190, 278
SfaNI	GCATC	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	267
Sse9I	AATT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	64, 211
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	90, 139, 243
TasI	AATT	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.