Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

46103020 .. 46103703

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG328500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGACTTCGCAGCAGGAAAGGTCTGAGCTGGACGAGAGGGCCAGGCGAGGAGAGACTGTGATCCCCGGCGGGACTGGCGGCAAAAGCCTTGAAGCTCAGGAACACCTTGCTGAAGGGAGGAGCAAAGGAGGGCAGACGAGGAAGGAGCAGATAGGGCAGGAAGGGTACCAGGAAATGGGCCGCAAGGGAGGGCTGAGCACTGGGGACGAGTCCGGCGGAGAACGCGCCGCTCGGGAGGGTATTCCAATTGACGAGTCCAAGTACAAGACCAAGAGCAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

94

Amino Acids

10.17

Weight (kDa)

5.93

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	2 - 55	1.8e-24	Small hydrophilic plant seed protein
LEA_5	PF00477	41 - 88	4.1e-22	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	225
AciI	CCGC	5 cut(s)	69, 78, 181, 216, 228
AclWI	GGATC	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	167, 263
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	41, 168
AluBI	AGCT	2 cut(s)	28, 95
AluI	AGCT	2 cut(s)	28, 95
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	2 cut(s)	39, 178
ApeKI	GCWGC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	39, 178
AsuC2I	CCSGG	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	43, 170
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	283
BisI	GCNGC	4 cut(s)	11, 79, 181, 228
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	4 cut(s)	12, 80, 182, 229
Bme1390I	CCNGG	3 cut(s)	43, 66, 170
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	39, 178
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	3 cut(s)	43, 66, 170
BmrI	ACTGGG	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	79, 205
BseBI	CCWGG	2 cut(s)	43, 170
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	15, 110, 185
BseNI	ACTGG	2 cut(s)	79, 205
BseRI	GAGGAG	2 cut(s)	63, 133
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	41, 180
BshNI	GGYRCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	66, 213
BslFI	GGGAC	2 cut(s)	85, 218
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	2 cut(s)	85, 218
BsnI	GGCC	2 cut(s)	41, 180
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	60
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	5 cut(s)	69, 78, 181, 216, 228
BspANI	GGCC	2 cut(s)	41, 180
BspCNI	CTCAG	3 cut(s)	16, 109, 186
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	79, 205
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	43, 170
Bst4CI	ACNGT	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	24, 96, 194
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 84, 154, 222
BstNI	CCWGG	2 cut(s)	43, 170
BstSCI	CCNGG	3 cut(s)	41, 64, 168
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	41, 180
BtsIMutI	CAGTG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	39, 178
Csp6I	GTAC	2 cut(s)	166, 262
CviJI	RGCY	6 cut(s)	28, 41, 87, 95, 180, 193
CviKI_1	RGCY	6 cut(s)	28, 41, 87, 95, 180, 193
CviQI	GTAC	2 cut(s)	166, 262
DdeI	CTNAG	3 cut(s)	24, 96, 194
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	41, 168
FaqI	GGGAC	2 cut(s)	85, 218
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	11, 79, 181, 228
Fsp4HI	GCNGC	4 cut(s)	11, 79, 181, 228
FspBI	CTAG	1 cut(s)	283
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	11, 79, 181, 228
HaeIII	GGCC	2 cut(s)	41, 180
HapII	CCGG	2 cut(s)	66, 213
HhaI	GCGC	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	209, 254
HpaII	CCGG	2 cut(s)	66, 213
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	98, 233
HpyAV	CCTTC	3 cut(s)	107, 136, 155
HpyCH4III	ACNGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 84, 154, 222
HpyF3I	CTNAG	3 cut(s)	24, 96, 194
HspAI	GCGC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	120, 145
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	283
MalI	GATC	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	1 cut(s)	60
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	2 cut(s)	218, 263
MnlI	CCTC	7 cut(s)	30, 41, 111, 122, 132, 182, 229
MspI	CCGG	2 cut(s)	66, 213
MspR9I	CCNGG	3 cut(s)	43, 66, 170
MunI	CAATTG	1 cut(s)	246
MvaI	CCWGG	2 cut(s)	43, 170
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	75, 84, 154, 222
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	12, 80, 182, 229
PleI	GAGTC	2 cut(s)	217, 262
PpsI	GAGTC	2 cut(s)	217, 262
Psp6I	CCWGG	2 cut(s)	41, 168
PspGI	CCWGG	2 cut(s)	41, 168
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	39, 178
RsaI	GTAC	2 cut(s)	167, 263
RsaNI	GTAC	2 cut(s)	166, 262
SatI	GCNGC	4 cut(s)	11, 79, 181, 228
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	39, 178
SchI	GAGTC	2 cut(s)	218, 263
ScrFI	CCNGG	3 cut(s)	43, 66, 170
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	4 cut(s)	23, 30, 97, 108
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	5 cut(s)	69, 78, 181, 216, 228
SspMI	CTAG	1 cut(s)	283
StyD4I	CCNGG	3 cut(s)	41, 64, 168
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	1 cut(s)	246
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	3 cut(s)	81, 183, 230
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	10
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	175
XspI	CTAG	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.