Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

6661789 .. 6662548

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCCTCGGAGCAAGAGAAAAGGGGAGAGCTGGACGCCAAGGCAAGGCAAGGAAAGACTGTTGTTCCTGGAGGAACTGGCGGCAAGAGTCTTGATGCTCAGGAGCGCCTTGCTGAAGGGCGACAAAAGGGAGGGGAGACCAGGAGGGAGCAGATGGGTCGTGAAGGGTACCAGGAGATAGGAAAGAAAGGAGGACTGAGCACCACAGACAAGCCTGGAGGAGAGCGCGCTGCTGAGGAAGGAATTCCTATTGACGAGTCCAAGTACAAAACTAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0031647 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050821 GO:0050896 GO:0061458 GO:0065007 GO:0065008 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

94

Amino Acids

10.01

Weight (kDa)

9.22

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	1 - 49	1.8e-18	Small hydrophilic plant seed protein
LEA_5	PF00477	42 - 89	7.4e-21	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccII	CGCG	1 cut(s)	228
AciI	CCGC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	170, 266
AfiI	CCNNNNNNNGG	1 cut(s)	45
AjnI	CCWGG	4 cut(s)	67, 140, 171, 214
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	243
Asp718I	GGTACC	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	108, 228, 230
BanI	GGYRCC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	203
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	4 cut(s)	69, 142, 173, 216
BcoDI	GTCTC	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	2 cut(s)	82, 231
BlsI	GCNGC	2 cut(s)	83, 232
Bme1390I	CCNGG	4 cut(s)	69, 142, 173, 216
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	4 cut(s)	69, 142, 173, 216
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	2 cut(s)	90, 237
Bpu10I	CCTNAGC	2 cut(s)	99, 234
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	6, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	4 cut(s)	69, 142, 173, 216
BseDI	CCNNGG	2 cut(s)	6, 39
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	113, 188, 225
BseNI	ACTGG	1 cut(s)	82
BsePI	GCGCGC	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	112, 189, 226
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	6, 39
BssHII	GCGCGC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	4 cut(s)	69, 142, 173, 216
Bst4CI	ACNGT	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	99, 197, 234, 273
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	3 cut(s)	108, 228, 230
BstMAI	GTCTC	1 cut(s)	131
BstNI	CCWGG	4 cut(s)	69, 142, 173, 216
BstSCI	CCNGG	4 cut(s)	67, 140, 171, 214
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	3 cut(s)	108, 228, 230
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	169, 265
CviJI	RGCY	3 cut(s)	5, 31, 214
CviKI_1	RGCY	3 cut(s)	5, 31, 214
CviQI	GTAC	2 cut(s)	169, 265
DdeI	CTNAG	4 cut(s)	99, 197, 234, 273
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	243
EcoRII	CCWGG	4 cut(s)	67, 140, 171, 214
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	82, 231
Fsp4HI	GCNGC	2 cut(s)	82, 231
GlaI	GCGC	3 cut(s)	107, 227, 229
GluI	GCNGC	2 cut(s)	82, 231
GsuI	CTGGAG	2 cut(s)	90, 237
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	3 cut(s)	108, 228, 230
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	3 cut(s)	106, 226, 228
HinP1I	GCGC	3 cut(s)	106, 226, 228
HinfI	GANTC	2 cut(s)	88, 257
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	92, 101, 161
HpyAV	CCTTC	3 cut(s)	110, 158, 233
HpyCH4III	ACNGT	1 cut(s)	61
HpyF3I	CTNAG	4 cut(s)	99, 197, 234, 273
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	3 cut(s)	106, 226, 228
KpnI	GGTACC	1 cut(s)	172
LmnI	GCTCC	3 cut(s)	10, 103, 148
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	97, 266
MnlI	CCTC	7 cut(s)	16, 65, 125, 138, 185, 212, 229
MroXI	GAANNNNTTC	1 cut(s)	243
MspR9I	CCNGG	4 cut(s)	69, 142, 173, 216
MvaI	CCWGG	4 cut(s)	69, 142, 173, 216
MvnI	CGCG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	170
PauI	GCGCGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	243
PfoI	TCCNGGA	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	83, 232
PleI	GAGTC	2 cut(s)	96, 265
PpsI	GAGTC	2 cut(s)	96, 265
Psp6I	CCWGG	4 cut(s)	67, 140, 171, 214
PspGI	CCWGG	4 cut(s)	67, 140, 171, 214
PspN4I	GGNNCC	1 cut(s)	170
PteI	GCGCGC	1 cut(s)	226
RsaI	GTAC	2 cut(s)	170, 266
RsaNI	GTAC	2 cut(s)	169, 265
SatI	GCNGC	2 cut(s)	82, 231
SchI	GAGTC	2 cut(s)	97, 266
ScrFI	CCNGG	4 cut(s)	69, 142, 173, 216
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	4 cut(s)	67, 140, 171, 214
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	1 cut(s)	243
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.