Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

19214722 .. 19215831

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGTCAAAGCAACTGAGCAGAGAAGAGCTTGATGAGAAGGCGAAGCAAGGAGAGACCGTCGTCCCAGGTGGCACCGGTGGCCACAGCCTCGAAGCTCAAGAGCATCTTGCTGAAGGAAGGAGCAAGGGAGGGCAGACGAGGAAGGAGCAGCTAGGACATGAAGGTTATCAGGAGATCGGTCACAAAGGTGGAGAGGCGAGGAAGGAGCAGTTAGGGCACGAGGGTTATCAGGAGATGGGTCACAAAGGTGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATCAGGAGATGGGACACAAAGGAGGAGAGGCGAGGAAGGAGCAGCTAGGGCACGAGGGTTATAAGGAGATGGGACGTAAAGGAGGACTCAGTACGATGGAAAAATCTGGTGGAGAGCGTGCGGAGGAAGAAGGGATTGAGATCGATGAGTCAAAGTTCACCAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

152

Amino Acids

16.61

Weight (kDa)

5.75

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	1 - 109	3.1e-58	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	382
AgeI	ACCGGT	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	67
AleI	CACNNNNGTG	2 cut(s)	189, 249
AluBI	AGCT	5 cut(s)	31, 98, 154, 274, 334
AluI	AGCT	5 cut(s)	31, 98, 154, 274, 334
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	151, 271, 331
AsiGI	ACCGGT	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	439
BaeGI	GKGCMC	3 cut(s)	222, 282, 342
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	74
BauI	CACGAG	3 cut(s)	221, 281, 341
BbvI	GCAGC	3 cut(s)	163, 283, 343
BccI	CCATC	4 cut(s)	232, 292, 352, 379
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	3 cut(s)	155, 275, 335
BisI	GCNGC	3 cut(s)	152, 272, 332
BlsI	GCNGC	3 cut(s)	153, 273, 333
Bme1390I	CCNGG	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	115
BoxI	GACNNNNGTC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bse118I	RCCGGY	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	8, 391
BseRI	GAGGAG	1 cut(s)	327
BseSI	GKGCMC	3 cut(s)	222, 282, 342
BseXI	GCAGC	3 cut(s)	163, 283, 343
BshFI	GGCC	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	74
BshTI	ACCGGT	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	3 cut(s)	50, 315, 375
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	3 cut(s)	50, 315, 375
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	222, 282, 342
Bsp143I	GATC	2 cut(s)	177, 429
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	9, 390
BspDI	ATCGAT	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	177, 429
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	3 cut(s)	221, 281, 341
Bst2BI	CACGAG	3 cut(s)	221, 281, 341
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	17, 377
BstKTI	GATC	2 cut(s)	180, 432
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	2 cut(s)	177, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 217, 277, 337
BstNI	CCWGG	1 cut(s)	69
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	67
BstSLI	GKGCMC	3 cut(s)	222, 282, 342
BstV1I	GCAGC	3 cut(s)	163, 283, 343
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	381
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	7 cut(s)	31, 84, 90, 98, 154, 274, 334
CviKI_1	RGCY	7 cut(s)	31, 84, 90, 98, 154, 274, 334
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	17, 377
DpnI	GATC	2 cut(s)	179, 431
DpnII	GATC	2 cut(s)	177, 429
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	164
FaiI	YATR	2 cut(s)	162, 351
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FaqI	GGGAC	3 cut(s)	50, 315, 375
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	152, 272, 332
Fsp4HI	GCNGC	3 cut(s)	152, 272, 332
FspBI	CTAG	3 cut(s)	155, 275, 335
GluI	GCNGC	3 cut(s)	152, 272, 332
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	164
HinfI	GANTC	2 cut(s)	375, 437
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188III	TCNNGA	4 cut(s)	101, 173, 233, 293
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	9 cut(s)	34, 110, 114, 139, 158, 199, 259, 319, 413
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 217, 277, 337
HpyF3I	CTNAG	2 cut(s)	17, 377
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	177, 429
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	5 cut(s)	123, 148, 208, 268, 328
LpnPI	CCDG	7 cut(s)	54, 81, 91, 158, 218, 278, 381
Lsp1109I	GCAGC	3 cut(s)	163, 283, 343
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	3 cut(s)	155, 275, 335
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	182, 242
MalI	GATC	2 cut(s)	179, 431
MboI	GATC	2 cut(s)	177, 429
MboII	GAAGA	2 cut(s)	38, 428
MhlI	GDGCHC	3 cut(s)	222, 282, 342
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	369, 446
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	189, 249
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	4 cut(s)	81, 217, 277, 337
NdeII	GATC	2 cut(s)	177, 429
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	182, 242
OliI	CACNNNNGTG	2 cut(s)	189, 249
PciSI	GCTCTTC	1 cut(s)	21
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	153, 273, 333
PleI	GAGTC	2 cut(s)	369, 445
PpsI	GAGTC	2 cut(s)	369, 445
PshAI	GACNNNNGTC	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	2 cut(s)	189, 249
SapI	GCTCTTC	1 cut(s)	21
SatI	GCNGC	3 cut(s)	152, 272, 332
Sau3AI	GATC	2 cut(s)	177, 429
SchI	GAGTC	2 cut(s)	369, 446
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	3 cut(s)	222, 282, 342
SfaNI	GCATC	1 cut(s)	115
SgrAI	CRCCGGYG	1 cut(s)	77
SmiMI	CAYNNNNRTG	2 cut(s)	189, 249
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	3 cut(s)	155, 275, 335
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	93, 432
TaqII	GACCGA	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	182, 242
TseI	GCWGC	3 cut(s)	151, 271, 331
Tsp45I	GTSAC	2 cut(s)	182, 242
TspDTI	ATGAA	1 cut(s)	177
XspI	CTAG	3 cut(s)	155, 275, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.