Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

39104441 .. 39115822

Gene Structure 11382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCCTCGGAACAGGAGAGAAGGGATCCCCAGAAGAGGGCAGAGCTGGACGAAAAAGCACGGCGGGGAGAGACTGTTGTTCCCGGTGGAACTGGTGGCAAGAGCCTCGAGGCTCAGGAGCACCTTGCTGAAGTACGCGCTGATCTTCATCTCCATGCCTCGGCGACCGTGTGGTTAGAACCAAAAGCAACGCACCACGTCACCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

69

Amino Acids

7.63

Weight (kDa)

6.18

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 47	5.4e-16	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	107
AccII	CGCG	1 cut(s)	138
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	20, 33
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	36, 37, 160
AjiI	CACGTC	1 cut(s)	199
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	20, 33
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	123
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	6, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 37, 160
Bse1I	ACTGG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	6, 159
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	36, 37, 160
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	3 cut(s)	36, 37, 160
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	25, 142
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	20, 33
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	6, 159
BssMI	GATC	2 cut(s)	25, 142
Bst4CI	ACNGT	2 cut(s)	76, 169
Bst6I	CTCTTC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	28, 145
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	25, 142
BstMCI	CGRYCG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	82
BstUI	CGCG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	4 cut(s)	5, 46, 105, 113
CviKI_1	RGCY	4 cut(s)	5, 46, 105, 113
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	27, 144
DpnII	GATC	2 cut(s)	25, 142
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	107
FaeI	CATG	1 cut(s)	158
FaiI	YATR	1 cut(s)	156
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	76, 169
HpyCH4IV	ACGT	1 cut(s)	198
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	158
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	25, 142
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	5 cut(s)	32, 44, 78, 97, 101
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	27, 144
MboI	GATC	2 cut(s)	25, 142
MboII	GAAGA	2 cut(s)	46, 137
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	205
MnlI	CCTC	5 cut(s)	16, 30, 103, 116, 169
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	138
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	25, 142
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	27
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	25, 142
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	3 cut(s)	48, 126, 201
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	76, 169
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.