Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

26213716 .. 26214593

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCATCAGAAAAAATGGATCCACAGAAAAGAAGGGAGCTGGACGAGAAGGCAAGAAAGGGAGAGGTTGTCATCCCTGGTGGAACAGGTGGCAAGAGCCTTGAGGCTCAAGAGCACCTTGCTGAAGGAAGGAGCCGTGGAGGGCAGACAAGGAAGAATGAGATAGGGCATGAGGGGTACCATGAGATGGGGAAGAAGGGTGGACTGAGCACAACTGACAAGTCCGGAGGAGAGCGTGCTGCGGAGGAAGGAATCCCACTTGACGAGTCCAAGTACAAAACGAACGGTCGTTCTAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

101

Amino Acids

10.84

Weight (kDa)

6.85

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	14, 27
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	179, 275
AfiI	CCNNNNNNNGG	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw21I	GWGCWC	2 cut(s)	117, 212
AlwI	GGATC	2 cut(s)	14, 27
Aor13HI	TCCGGA	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	239
Asp718I	GGTACC	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	117, 212
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	78
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	3 cut(s)	21, 134, 179
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	93, 122
BsaJI	CCNNGG	2 cut(s)	76, 136
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	76, 136
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	226
Bsh1285I	CGRYCG	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	117, 212
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	117, 212
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	198
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	21, 134, 179
BspPI	GGATC	2 cut(s)	14, 27
BspT107I	GGYRCC	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	76, 136
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	178, 274
CviAII	CATG	2 cut(s)	170, 182
CviJI	RGCY	4 cut(s)	40, 99, 107, 135
CviKI_1	RGCY	4 cut(s)	40, 99, 107, 135
CviQI	GTAC	2 cut(s)	178, 274
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	2 cut(s)	173, 185
FaiI	YATR	2 cut(s)	171, 183
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	2 cut(s)	169, 181
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	240
HapII	CCGG	1 cut(s)	225
Hin1II	CATG	2 cut(s)	173, 185
HinfI	GANTC	2 cut(s)	252, 266
HpaII	CCGG	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	110, 225
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	6 cut(s)	27, 43, 119, 123, 190, 242
HpyCH4III	ACNGT	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	173, 185
Kpn2I	TCCGGA	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	37, 132
LpnPI	CCDG	5 cut(s)	26, 63, 72, 90, 238
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	14
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	166, 205
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	117, 212
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	58, 97, 134, 166, 221, 238
MroI	TCCGGA	1 cut(s)	224
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	173, 185
NlaIV	GGNNCC	3 cut(s)	21, 134, 179
PfeI	GAWTC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	21, 134, 179
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	179, 275
RsaNI	GTAC	2 cut(s)	178, 274
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	117, 212
SetI	ASST	4 cut(s)	42, 69, 91, 120
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	101, 108
SmoI	CTYRAG	2 cut(s)	101, 108
SsiI	CCGC	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	252
TseI	GCWGC	1 cut(s)	239
Van91I	CCANNNNNTGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.