abundant protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 25 - 186 | 7.1e-52 | TIR domain |
| TIR_2 | PF13676 | 27 - 119 | 1.6e-13 | TIR domain |
| NB-ARC | PF00931 | 210 - 380 | 6.5e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 451 - 523 | 3.4e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 786 - 956 | 1.9e-22 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 811 - 870 | 1.7e-07 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 902, 2595 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 838 |
| Acc16I | TGCGCA | 1 cut(s) | 2357 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 989, 1448 |
| AccI | GTMKAC | 2 cut(s) | 619, 1071 |
| AccII | CGCG | 1 cut(s) | 109 |
| AccIII | TCCGGA | 1 cut(s) | 2863 |
| AciI | CCGC | 3 cut(s) | 138, 552, 1899 |
| AclI | AACGTT | 3 cut(s) | 1039, 1311, 2880 |
| AclWI | GGATC | 7 cut(s) | 356, 1009, 1283, 2031, 2241, 2484, 2523 |
| AcsI | RAATTY | 9 cut(s) | 521, 1163, 1930, 1954, 2095, 2189, 2412, 2572, 2859 |
| AcuI | CTGAAG | 2 cut(s) | 151, 1978 |
| AfaI | GTAC | 2 cut(s) | 375, 857 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 279, 989, 1448, 1471 |
| AflIII | ACRYGT | 1 cut(s) | 1907 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 626 |
| AhlI | ACTAGT | 1 cut(s) | 2305 |
| AjiI | CACGTC | 2 cut(s) | 949, 1910 |
| AjnI | CCWGG | 1 cut(s) | 1665 |
| Alw21I | GWGCWC | 1 cut(s) | 213 |
| Alw26I | GTCTC | 5 cut(s) | 155, 824, 1773, 2296, 2573 |
| AlwI | GGATC | 7 cut(s) | 356, 1009, 1283, 2031, 2241, 2484, 2523 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1448 |
| Ama87I | CYCGRG | 1 cut(s) | 555 |
| Aor13HI | TCCGGA | 1 cut(s) | 2863 |
| AoxI | GGCC | 4 cut(s) | 491, 1195, 1473, 1820 |
| ApeKI | GCWGC | 6 cut(s) | 23, 473, 590, 1590, 1896, 2553 |
| ApoI | RAATTY | 9 cut(s) | 521, 1163, 1930, 1954, 2095, 2189, 2412, 2572, 2859 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1127 |
| AspLEI | GCGC | 2 cut(s) | 111, 2358 |
| AspS9I | GGNCC | 1 cut(s) | 1669 |
| AsuC2I | CCSGG | 1 cut(s) | 1581 |
| AsuHPI | GGTGA | 2 cut(s) | 883, 2876 |
| AvaI | CYCGRG | 1 cut(s) | 555 |
| AvaII | GGWCC | 1 cut(s) | 1669 |
| BanII | GRGCYC | 2 cut(s) | 213, 1581 |
| BbsI | GAAGAC | 2 cut(s) | 201, 2780 |
| Bbv12I | GWGCWC | 1 cut(s) | 213 |
| BbvI | GCAGC | 6 cut(s) | 35, 485, 577, 1602, 1883, 2565 |
| BccI | CCATC | 7 cut(s) | 483, 497, 813, 991, 1265, 1855, 2642 |
| BceAI | ACGGC | 2 cut(s) | 632, 2320 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1841, 1875 |
| BciT130I | CCWGG | 1 cut(s) | 1667 |
| BciVI | GTATCC | 3 cut(s) | 97, 1349, 1981 |
| BclI | TGATCA | 2 cut(s) | 883, 1096 |
| BcnI | CCSGG | 1 cut(s) | 1581 |
| BcoDI | GTCTC | 5 cut(s) | 155, 824, 1773, 2296, 2573 |
| BcuI | ACTAGT | 1 cut(s) | 2305 |
| BfaI | CTAG | 8 cut(s) | 615, 815, 960, 1337, 1394, 1418, 2291, 2306 |
| BfmI | CTRYAG | 1 cut(s) | 313 |
| BfuI | GTATCC | 3 cut(s) | 97, 1349, 1981 |
| BisI | GCNGC | 6 cut(s) | 24, 474, 591, 1591, 1897, 2554 |
| BlsI | GCNGC | 6 cut(s) | 25, 475, 592, 1592, 1898, 2555 |
| Bme1390I | CCNGG | 2 cut(s) | 1581, 1667 |
| Bme18I | GGWCC | 1 cut(s) | 1669 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 626 |
| BmeT110I | CYCGRG | 1 cut(s) | 555 |
| BmgBI | CACGTC | 2 cut(s) | 949, 1910 |
| BmgT120I | GGNCC | 1 cut(s) | 1669 |
| BmiI | GGNNCC | 2 cut(s) | 1671, 2218 |
| BmrFI | CCNGG | 2 cut(s) | 1581, 1667 |
| BoxI | GACNNNNGTC | 1 cut(s) | 951 |
| BpiI | GAAGAC | 2 cut(s) | 201, 2780 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 2 cut(s) | 1131, 1797 |
| BpuEI | CTTGAG | 4 cut(s) | 259, 485, 1176, 2204 |
| BpuMI | CCSGG | 1 cut(s) | 1581 |
| BsaBI | GATNNNNATC | 2 cut(s) | 775, 1095 |
| BsaI | GGTCTC | 1 cut(s) | 155 |
| BsaJI | CCNNGG | 1 cut(s) | 1673 |
| BsaWI | WCCGGW | 1 cut(s) | 2863 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 279, 989, 1448, 1471 |
| Bse1I | ACTGG | 5 cut(s) | 27, 780, 1442, 1453, 1645 |
| Bse8I | GATNNNNATC | 2 cut(s) | 775, 1095 |
| BseAI | TCCGGA | 1 cut(s) | 2863 |
| BseBI | CCWGG | 1 cut(s) | 1667 |
| BseDI | CCNNGG | 1 cut(s) | 1673 |
| BseJI | GATNNNNATC | 2 cut(s) | 775, 1095 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 279, 989, 1448, 1471 |
| BseMII | CTCAG | 3 cut(s) | 77, 381, 2510 |
| BseNI | ACTGG | 5 cut(s) | 27, 780, 1442, 1453, 1645 |
| BseRI | GAGGAG | 3 cut(s) | 204, 242, 1265 |
| BseXI | GCAGC | 6 cut(s) | 35, 485, 577, 1602, 1883, 2565 |
| BseYI | CCCAGC | 1 cut(s) | 2739 |
| BsgI | GTGCAG | 3 cut(s) | 576, 1621, 2572 |
| Bsh1236I | CGCG | 1 cut(s) | 109 |
| BshFI | GGCC | 4 cut(s) | 493, 1197, 1475, 1822 |
| BsiHKAI | GWGCWC | 1 cut(s) | 213 |
| BsiHKCI | CYCGRG | 1 cut(s) | 555 |
| BsiSI | CCGG | 2 cut(s) | 1581, 2864 |
| BslFI | GGGAC | 3 cut(s) | 413, 1655, 1935 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 279, 989, 1448, 1471 |
| BsmAI | GTCTC | 5 cut(s) | 155, 824, 1773, 2296, 2573 |
| BsmBI | CGTCTC | 1 cut(s) | 2573 |
| BsmFI | GGGAC | 3 cut(s) | 413, 1655, 1935 |
| BsmI | GAATGC | 5 cut(s) | 1127, 1129, 1705, 1832, 2647 |
| BsnI | GGCC | 4 cut(s) | 493, 1197, 1475, 1822 |
| Bso31I | GGTCTC | 1 cut(s) | 155 |
| BsoBI | CYCGRG | 1 cut(s) | 555 |
| Bsp1286I | GDGCHC | 2 cut(s) | 213, 1581 |
| Bsp13I | TCCGGA | 1 cut(s) | 2863 |
| Bsp19I | CCATGG | 1 cut(s) | 1673 |
| BspACI | CCGC | 3 cut(s) | 138, 552, 1899 |
| BspANI | GGCC | 4 cut(s) | 493, 1197, 1475, 1822 |
| BspCNI | CTCAG | 3 cut(s) | 78, 380, 2511 |
| BspEI | TCCGGA | 1 cut(s) | 2863 |
| BspFNI | CGCG | 1 cut(s) | 109 |
| BspHI | TCATGA | 1 cut(s) | 2077 |
| BspLI | GGNNCC | 2 cut(s) | 1671, 2218 |
| BspMAI | CTGCAG | 1 cut(s) | 317 |
| BspPI | GGATC | 7 cut(s) | 356, 1009, 1283, 2031, 2241, 2484, 2523 |
| BspQI | GCTCTTC | 1 cut(s) | 218 |
| BspTNI | GGTCTC | 1 cut(s) | 155 |
| BsrI | ACTGG | 5 cut(s) | 27, 780, 1442, 1453, 1645 |
| BssECI | CCNNGG | 1 cut(s) | 1673 |
| BssNAI | GTATAC | 1 cut(s) | 1072 |
| BssT1I | CCWWGG | 1 cut(s) | 1673 |
| Bst1107I | GTATAC | 1 cut(s) | 1072 |
| Bst2UI | CCWGG | 1 cut(s) | 1667 |
| Bst4CI | ACNGT | 1 cut(s) | 2550 |
| Bst6I | CTCTTC | 2 cut(s) | 181, 218 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1175, 1599 |
| BstC8I | GCNNGC | 2 cut(s) | 2180, 2797 |
| BstDEI | CTNAG | 9 cut(s) | 86, 182, 367, 527, 976, 1686, 1730, 1976, 2519 |
| BstDSI | CCRYGG | 1 cut(s) | 1673 |
| BstFNI | CGCG | 1 cut(s) | 109 |
| BstHHI | GCGC | 2 cut(s) | 111, 2358 |
| BstMAI | GTCTC | 5 cut(s) | 155, 824, 1773, 2296, 2573 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 675, 1175, 1576, 1599, 1819 |
| BstNI | CCWGG | 1 cut(s) | 1667 |
| BstNSI | RCATGY | 1 cut(s) | 1178 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 951 |
| BstSCI | CCNGG | 2 cut(s) | 1579, 1665 |
| BstSFI | CTRYAG | 1 cut(s) | 313 |
| BstUI | CGCG | 1 cut(s) | 109 |
| BstV1I | GCAGC | 6 cut(s) | 35, 485, 577, 1602, 1883, 2565 |
| BstV2I | GAAGAC | 2 cut(s) | 201, 2780 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1288, 2023, 2233, 2515 |
| BstYI | RGATCY | 5 cut(s) | 361, 1288, 2023, 2233, 2515 |
| BstZ17I | GTATAC | 1 cut(s) | 1072 |
| BsuI | GTATCC | 3 cut(s) | 97, 1349, 1981 |
| BsuRI | GGCC | 4 cut(s) | 493, 1197, 1475, 1822 |
| BtgI | CCRYGG | 1 cut(s) | 1673 |
| BtrI | CACGTC | 2 cut(s) | 949, 1910 |
| BtsI | GCAGTG | 1 cut(s) | 2464 |
| BtsIMutI | CAGTG | 3 cut(s) | 1449, 2002, 2464 |
| Cac8I | GCNNGC | 2 cut(s) | 2180, 2797 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1448 |
| CciI | TCATGA | 1 cut(s) | 2077 |
| CfoI | GCGC | 2 cut(s) | 111, 2358 |
| Cfr13I | GGNCC | 1 cut(s) | 1669 |
| CseI | GACGC | 3 cut(s) | 410, 1547, 2590 |
| Csp6I | GTAC | 2 cut(s) | 374, 856 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1790, 1825 |
| CviQI | GTAC | 2 cut(s) | 374, 856 |
| DdeI | CTNAG | 9 cut(s) | 86, 182, 367, 527, 976, 1686, 1730, 1976, 2519 |
| DraI | TTTAAA | 1 cut(s) | 1350 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 838 |
| DriI | GACNNNNNGTC | 1 cut(s) | 626 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 838 |
| Eam1104I | CTCTTC | 2 cut(s) | 181, 218 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 626 |
| EarI | CTCTTC | 2 cut(s) | 181, 218 |
| EciI | GGCGGA | 1 cut(s) | 541 |
| Ecl136II | GAGCTC | 1 cut(s) | 211 |
| Eco130I | CCWWGG | 1 cut(s) | 1673 |
| Eco147I | AGGCCT | 2 cut(s) | 1197, 1475 |
| Eco24I | GRGCYC | 2 cut(s) | 213, 1581 |
| Eco31I | GGTCTC | 1 cut(s) | 155 |
| Eco32I | GATATC | 2 cut(s) | 1369, 1692 |
| Eco47I | GGWCC | 1 cut(s) | 1669 |
| Eco53kI | GAGCTC | 1 cut(s) | 211 |
| Eco57I | CTGAAG | 2 cut(s) | 151, 1978 |
| Eco88I | CYCGRG | 1 cut(s) | 555 |
| EcoICRI | GAGCTC | 1 cut(s) | 211 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1669 |
| EcoRII | CCWGG | 1 cut(s) | 1665 |
| EcoRV | GATATC | 2 cut(s) | 1369, 1692 |
| EcoT14I | CCWWGG | 1 cut(s) | 1673 |
| EcoT22I | ATGCAT | 2 cut(s) | 1129, 1524 |
| EcoT38I | GRGCYC | 2 cut(s) | 213, 1581 |
| ErhI | CCWWGG | 1 cut(s) | 1673 |
| Esp3I | CGTCTC | 1 cut(s) | 2573 |
| FaqI | GGGAC | 3 cut(s) | 413, 1655, 1935 |
| FauNDI | CATATG | 1 cut(s) | 671 |
| FbaI | TGATCA | 2 cut(s) | 883, 1096 |
| FblI | GTMKAC | 2 cut(s) | 619, 1071 |
| Fnu4HI | GCNGC | 6 cut(s) | 24, 474, 591, 1591, 1897, 2554 |
| FriOI | GRGCYC | 2 cut(s) | 213, 1581 |
| Fsp4HI | GCNGC | 6 cut(s) | 24, 474, 591, 1591, 1897, 2554 |
| FspBI | CTAG | 8 cut(s) | 615, 815, 960, 1337, 1394, 1418, 2291, 2306 |
| FspI | TGCGCA | 1 cut(s) | 2357 |
| GlaI | GCGC | 2 cut(s) | 110, 2357 |
| GluI | GCNGC | 6 cut(s) | 24, 474, 591, 1591, 1897, 2554 |
| GsaI | CCCAGC | 1 cut(s) | 2743 |
| GsuI | CTGGAG | 2 cut(s) | 1131, 1797 |
| HaeIII | GGCC | 4 cut(s) | 493, 1197, 1475, 1822 |
| HapII | CCGG | 2 cut(s) | 1581, 2864 |
| HgaI | GACGC | 3 cut(s) | 410, 1547, 2590 |
| HhaI | GCGC | 2 cut(s) | 111, 2358 |
| Hin6I | GCGC | 2 cut(s) | 109, 2356 |
| HinP1I | GCGC | 2 cut(s) | 109, 2356 |
| HincII | GTYRAC | 1 cut(s) | 631 |
| HindII | GTYRAC | 1 cut(s) | 631 |
| HindIII | AAGCTT | 5 cut(s) | 179, 1101, 1422, 1708, 2180 |
| HpaII | CCGG | 2 cut(s) | 1581, 2864 |
| HphI | GGTGA | 2 cut(s) | 883, 2876 |
| Hpy166II | GTNNAC | 6 cut(s) | 620, 631, 1072, 1399, 2155, 2884 |
| Hpy8I | GTNNAC | 6 cut(s) | 620, 631, 1072, 1399, 2155, 2884 |
| HpyAV | CCTTC | 6 cut(s) | 175, 451, 579, 737, 862, 1208 |
| HpyCH4III | ACNGT | 1 cut(s) | 2550 |
| HpyCH4IV | ACGT | 7 cut(s) | 43, 948, 1039, 1311, 1909, 2677, 2880 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 675, 1175, 1576, 1599, 1819 |
| HpyF3I | CTNAG | 9 cut(s) | 86, 182, 367, 527, 976, 1686, 1730, 1976, 2519 |
| HpySE526I | ACGT | 7 cut(s) | 43, 948, 1039, 1311, 1909, 2677, 2880 |
| HspAI | GCGC | 2 cut(s) | 109, 2356 |
| Kpn2I | TCCGGA | 1 cut(s) | 2863 |
| Ksp22I | TGATCA | 2 cut(s) | 883, 1096 |
| LguI | GCTCTTC | 1 cut(s) | 218 |
| LmnI | GCTCC | 2 cut(s) | 985, 2866 |
| Lsp1109I | GCAGC | 6 cut(s) | 35, 485, 577, 1602, 1883, 2565 |
| MaeI | CTAG | 8 cut(s) | 615, 815, 960, 1337, 1394, 1418, 2291, 2306 |
| MaeII | ACGT | 7 cut(s) | 43, 948, 1039, 1311, 1909, 2677, 2880 |
| MaeIII | GTNAC | 4 cut(s) | 1427, 1444, 2086, 2459 |
| MfeI | CAATTG | 5 cut(s) | 222, 600, 702, 1802, 2484 |
| MflI | RGATCY | 5 cut(s) | 361, 1288, 2023, 2233, 2515 |
| MhlI | GDGCHC | 2 cut(s) | 213, 1581 |
| MlyI | GAGTC | 6 cut(s) | 239, 620, 900, 961, 1574, 2722 |
| MmeI | TCCRAC | 5 cut(s) | 1821, 2001, 2047, 2493, 2645 |
| Mph1103I | ATGCAT | 2 cut(s) | 1129, 1524 |
| MroI | TCCGGA | 1 cut(s) | 2863 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1127 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1912 |
| MspA1I | CMGCKG | 1 cut(s) | 1896 |
| MspI | CCGG | 2 cut(s) | 1581, 2864 |
| MspR9I | CCNGG | 2 cut(s) | 1581, 1667 |
| MunI | CAATTG | 5 cut(s) | 222, 600, 702, 1802, 2484 |
| Mva1269I | GAATGC | 5 cut(s) | 1127, 1129, 1705, 1832, 2647 |
| MvaI | CCWGG | 1 cut(s) | 1667 |
| MvnI | CGCG | 1 cut(s) | 109 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 675, 1175, 1576, 1599, 1819 |
| NciI | CCSGG | 1 cut(s) | 1581 |
| NcoI | CCATGG | 1 cut(s) | 1673 |
| NdeI | CATATG | 1 cut(s) | 671 |
| NlaIV | GGNNCC | 2 cut(s) | 1671, 2218 |
| NmuCI | GTSAC | 2 cut(s) | 1444, 2459 |
| NsbI | TGCGCA | 1 cut(s) | 2357 |
| NsiI | ATGCAT | 2 cut(s) | 1129, 1524 |
| NspI | RCATGY | 1 cut(s) | 1178 |
| PagI | TCATGA | 1 cut(s) | 2077 |
| PceI | AGGCCT | 2 cut(s) | 1197, 1475 |
| PciSI | GCTCTTC | 1 cut(s) | 218 |
| PctI | GAATGC | 5 cut(s) | 1127, 1129, 1705, 1832, 2647 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1127 |
| PfeI | GAWTC | 8 cut(s) | 1726, 2001, 2053, 2060, 2429, 2533, 2688, 2915 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 989, 1448 |
| PkrI | GCNGC | 6 cut(s) | 25, 475, 592, 1592, 1898, 2555 |
| PleI | GAGTC | 6 cut(s) | 238, 619, 899, 960, 1573, 2722 |
| PpsI | GAGTC | 6 cut(s) | 238, 619, 899, 960, 1573, 2722 |
| PpuMI | RGGWCCY | 1 cut(s) | 1669 |
| PshAI | GACNNNNGTC | 1 cut(s) | 951 |
| PsiI | TTATAA | 2 cut(s) | 902, 2595 |
| Psp124BI | GAGCTC | 1 cut(s) | 213 |
| Psp1406I | AACGTT | 3 cut(s) | 1039, 1311, 2880 |
| Psp5II | RGGWCCY | 1 cut(s) | 1669 |
| Psp6I | CCWGG | 1 cut(s) | 1665 |
| PspFI | CCCAGC | 1 cut(s) | 2739 |
| PspGI | CCWGG | 1 cut(s) | 1665 |
| PspN4I | GGNNCC | 2 cut(s) | 1671, 2218 |
| PspPI | GGNCC | 1 cut(s) | 1669 |
| PspPPI | RGGWCCY | 1 cut(s) | 1669 |
| PstI | CTGCAG | 1 cut(s) | 317 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1448 |
| PsuI | RGATCY | 5 cut(s) | 361, 1288, 2023, 2233, 2515 |
| PvuII | CAGCTG | 1 cut(s) | 1896 |
| RsaI | GTAC | 2 cut(s) | 375, 857 |
| RsaNI | GTAC | 2 cut(s) | 374, 856 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1912 |
| SacI | GAGCTC | 1 cut(s) | 213 |
| SapI | GCTCTTC | 1 cut(s) | 218 |
| SatI | GCNGC | 6 cut(s) | 24, 474, 591, 1591, 1897, 2554 |
| Sau96I | GGNCC | 1 cut(s) | 1669 |
| SchI | GAGTC | 6 cut(s) | 239, 620, 900, 961, 1574, 2722 |
| ScrFI | CCNGG | 2 cut(s) | 1581, 1667 |
| SduI | GDGCHC | 2 cut(s) | 213, 1581 |
| SfcI | CTRYAG | 1 cut(s) | 313 |
| SinI | GGWCC | 1 cut(s) | 1669 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1912 |
| SmlI | CTYRAG | 4 cut(s) | 274, 464, 1191, 2183 |
| SmoI | CTYRAG | 4 cut(s) | 274, 464, 1191, 2183 |
| SpeI | ACTAGT | 1 cut(s) | 2305 |
| SseBI | AGGCCT | 2 cut(s) | 1197, 1475 |
| SsiI | CCGC | 3 cut(s) | 138, 552, 1899 |
| SspI | AATATT | 2 cut(s) | 880, 1885 |
| SspMI | CTAG | 8 cut(s) | 615, 815, 960, 1337, 1394, 1418, 2291, 2306 |
| SstI | GAGCTC | 1 cut(s) | 213 |
| StuI | AGGCCT | 2 cut(s) | 1197, 1475 |
| StyD4I | CCNGG | 2 cut(s) | 1579, 1665 |
| StyI | CCWWGG | 1 cut(s) | 1673 |
| TaaI | ACNGT | 1 cut(s) | 2550 |
| TaiI | ACGT | 7 cut(s) | 46, 951, 1042, 1314, 1912, 2680, 2883 |
| TaqI | TCGA | 6 cut(s) | 50, 94, 233, 417, 801, 2920 |
| TfiI | GAWTC | 8 cut(s) | 1726, 2001, 2053, 2060, 2429, 2533, 2688, 2915 |
| TscAI | CASTG | 3 cut(s) | 1449, 2002, 2464 |
| TseFI | GTSAC | 2 cut(s) | 1444, 2459 |
| TseI | GCWGC | 6 cut(s) | 23, 473, 590, 1590, 1896, 2553 |
| Tsp45I | GTSAC | 2 cut(s) | 1444, 2459 |
| TspGWI | ACGGA | 2 cut(s) | 2053, 2256 |
| TspRI | CASTG | 3 cut(s) | 1449, 2002, 2464 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 989, 1448 |
| VpaK11BI | GGWCC | 1 cut(s) | 1669 |
| XapI | RAATTY | 9 cut(s) | 521, 1163, 1930, 1954, 2095, 2189, 2412, 2572, 2859 |
| XceI | RCATGY | 1 cut(s) | 1178 |
| XmiI | GTMKAC | 2 cut(s) | 619, 1071 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1127 |
| XspI | CTAG | 8 cut(s) | 615, 815, 960, 1337, 1394, 1418, 2291, 2306 |
| Zsp2I | ATGCAT | 2 cut(s) | 1129, 1524 |