Rroxscaffold_4G00310890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001002
Physical Location & Seq
Forward (+)
33065299 .. 33066462
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310890.1

Sequence Viewer

Length: 312 bp
ATGGGATCCGATCACACGTTGCTTGGTTTGTGGAGGGCTGCTGCGCGGTTGGGGAAGCATGGTTTGGTTGGTTCGGTTGAAGTGCACGGTCAAAGTAGGATTGGTGGGATTGAAGATCTTCCACGGGGTTGGTGGTGGAGGCTTCTATACATCTCAAACTCCATAAGACAAACCAAGATAGCAACATTAACCAAGAACAACACAAGTAAGAGATACCCAGAACCAAATTTGGCCAATCAAATACAAGAACAACGAAATGGGACAGCTGGAATTCCAAAATACTCAACCGGGTACGTGAAGAACAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.5

Weight (kDa)

10.39

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 46
AciI CCGC 1 cut(s) 46
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 2 cut(s) 226, 270
AfaI GTAC 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 80, 113
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 83
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 231
ApaLI GTGCAC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 38, 41
ApoI RAATTY 2 cut(s) 226, 270
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 87
BalI TGGCCA 1 cut(s) 233
BamHI GGATCC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 25, 28
BcnI CCSGG 1 cut(s) 289
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 39, 42
BlsI GCNGC 2 cut(s) 40, 43
Bme1390I CCNGG 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 2 cut(s) 25, 28
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 3 cut(s) 5, 10, 115
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 233
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 3 cut(s) 5, 10, 115
Bst4CI ACNGT 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 295
BstDSI CCRYGG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 8, 13, 118
BstMBI GATC 3 cut(s) 5, 10, 115
BstSCI CCNGG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 25, 28
BstX2I RGATCY 2 cut(s) 5, 115
BstXI CCANNNNNNTGG 1 cut(s) 129
BstYI RGATCY 2 cut(s) 5, 115
BsuRI GGCC 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 122
CfoI GCGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 292
CviAII CATG 1 cut(s) 59
CviJI RGCY 4 cut(s) 38, 142, 233, 266
CviKI_1 RGCY 4 cut(s) 38, 142, 233, 266
CviQI GTAC 1 cut(s) 292
DpnI GATC 3 cut(s) 7, 12, 117
DpnII GATC 3 cut(s) 5, 10, 115
EaeI YGGCCR 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 270
FaeI CATG 1 cut(s) 62
FaiI YATR 4 cut(s) 60, 148, 164, 310
FaqI GGGAC 1 cut(s) 274
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 39, 42
Fsp4HI GCNGC 2 cut(s) 39, 42
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 39, 42
HaeIII GGCC 1 cut(s) 233
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 62
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HpaII CCGG 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 2 cut(s) 17, 294
HpyCH4V TGCA 1 cut(s) 85
HpySE526I ACGT 2 cut(s) 17, 294
Hsp92II CATG 1 cut(s) 62
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 5, 10, 115
LpnPI CCDG 3 cut(s) 231, 252, 301
Lsp1109I GCAGC 2 cut(s) 25, 28
MaeII ACGT 2 cut(s) 17, 294
MalI GATC 3 cut(s) 7, 12, 117
MboI GATC 3 cut(s) 5, 10, 115
MboII GAAGA 3 cut(s) 110, 125, 310
MflI RGATCY 2 cut(s) 5, 115
MhlI GDGCHC 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 2 cut(s) 226, 270
MluNI TGGCCA 1 cut(s) 233
MnlI CCTC 2 cut(s) 27, 132
Mox20I TGGCCA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 233
MseI TTAA 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 46
NciI CCSGG 1 cut(s) 289
NdeII GATC 3 cut(s) 5, 10, 115
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 40, 43
Ppu21I YACGTR 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 7
PsuI RGATCY 2 cut(s) 5, 115
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 2 cut(s) 39, 42
Sau3AI GATC 3 cut(s) 5, 10, 115
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 87
SetI ASST 3 cut(s) 20, 268, 297
Sse9I AATT 2 cut(s) 226, 270
SsiI CCGC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 2 cut(s) 20, 297
TasI AATT 2 cut(s) 226, 270
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseI GCWGC 2 cut(s) 38, 41
VneI GTGCAC 1 cut(s) 83
XapI RAATTY 2 cut(s) 226, 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.