Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

4353842 .. 4356150

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0057700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

ATGGCTTCGAAGCTCGCCTCCTCCTCCCCCTCTTCTTCTTTCAAATACCAGCATGCCTTTCTCTACGCCTTAATCTTCTCTTTATTCCTGGTACTCCTCGTTTCATCTTTCAGACTCAATGTTATCAACTCCAACTTCGTAAATTTCGTCGTTGTTCGTCGGCAGCAGCAGCAGCAACCGGTCAAGAATCACAACGATAACGCCGTTAACGTGATCAAAGCCGTCTTCAAGAAATTGGGTAGAAGGAAGATGAAGGTCGGGTTGGTCAACGTAGACCACGACCACACACAGCTAATGCATGGATTAGAAGGTATAGACCCGGTTCCGGTGAGATTCGATAGAGTTGCTGCTGATCGGAAGTGGGAGGATTTTTTCCCGGATTGGATAGACGAAGACGAGAGATGGGGCCGCCCAAAGTGTCCGGAAATCCCCATGCCGAAGTTTGAGGATTACAAGGGCATCGATGTGATACTGGCCAAGGTCCCATGTGGGACTAATATTGGGAGTGGTAAGAAGGAAGGGGTTAGGGATGTGTTTAGGTTACAAGTGAATTTGGTGGTGGCCAATATGGCGGCGAGGATAGGGTGGATGGACCCTGATTATGGTGCTCCTCATCGGACGGTGTACGTTGTGTTCATCGGATCTTGTGGGCCCATGGTGGAGATTTTCAGATGTGATGACTTAGTGATGCGTCAAGGGAATTATAGGGTTTATAAGCCTGAGATTGGGAGGCTGAAGCAGAAGGTGCTTATGCCTTTTGGGTCGTGTGAACTTGCCTCTGGTTATGCACGAGCAGGTAAAGAAGCTTGGAGACCAAAGTACAAATACCGACCGAGACATGCCTATGTAACAGTCTTACACTCCTCAGAAGCCTACGTTTGTGGTGCAATAGCTTTGGCTCAAAGCATCATACAAACCAACTCCACCAAAGACCTAGTCCTCCTCGCTGACGATTCCATCACTCCCACATCCATCGCCGGCCTACAAGCCGCCGGATGGGATGTCAGGCGAATCCAACGAATCCGAAGCGTCTTTTCCGAAAAGGGTTCATACAATGAGTGGAACTACAGCAAACTACGTGTATGGCAACTAACTGAATACTCTAAAGTCATTTTCATCGATGCAGACCTTCTAGTCCTAGAAAACATGGACATCTTCTTCACATACCCACAATTATCTGCTGCGGCGAACCACAAGCACTTATTTAACTCCGGCTTGATGGTTTTGGAACCATCTCAATGCATGTTTGAATACCTAATGCGAAAAATCTTCAAAATCGAGCCTTACAATGGTGGTGATCAGGGATTCCTGAACGAAATCTTTACTCGGTGGCATAGACTCCCTTGGTGGCTAAATGCATTGAAAACTTTCGAGGGAAAGAGTATCGAAAAACATGTGATGGCCAATGACCTTTATGCAGTACATTATTTAGGGCTGAAGCCCTGGATGTGTTACAGAGATTATGATTGTAACTGGGATGTAGACAGTCATCAAGTTTTCGCGAGTGACTCAGCTCACCGGAGATGGTGGCAAATTTATGATGCCATGCCTAAGGAGCTGCAACCTTATTGTGGTTTGACACAGAAGATGGAGAAGAGTTTGAAGACGTGGAGAGATAGAGCAGCTAATAATGCTGGATTCGTTGATGGTCACTGGAAAATTGAGATTAAAGACCCTAGACAGCACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

563

Amino Acids

65.16

Weight (kDa)

9.12

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	285 - 386	7.9e-09	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AasI	GACNNNNNNGTC	1 cut(s)	1133
Acc36I	ACCTGC	1 cut(s)	785
AccI	GTMKAC	2 cut(s)	273, 1482
AccII	CGCG	1 cut(s)	1502
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	4 cut(s)	409, 572, 990, 1184
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	3 cut(s)	474, 561, 1401
AcsI	RAATTY	3 cut(s)	142, 550, 1533
AcuI	CTGAAG	2 cut(s)	755, 1457
AfaI	GTAC	4 cut(s)	93, 626, 821, 1422
AfiI	CCNNNNNNNGG	6 cut(s)	325, 602, 725, 996, 1289, 1571
AflIII	ACRYGT	2 cut(s)	1078, 1393
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	6 cut(s)	43, 229, 1250, 1273, 1363, 1603
AjiI	CACGTC	1 cut(s)	1608
AjnI	CCWGG	2 cut(s)	87, 1442
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	7 cut(s)	13, 292, 806, 893, 1514, 1558, 1625
AluI	AGCT	7 cut(s)	13, 292, 806, 893, 1514, 1558, 1625
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	805, 829
AlwI	GGATC	1 cut(s)	649
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	6 cut(s)	406, 474, 561, 650, 979, 1401
ApaI	GGGCCC	1 cut(s)	654
ApeKI	GCWGC	8 cut(s)	163, 166, 169, 172, 347, 1181, 1558, 1622
ApoI	RAATTY	3 cut(s)	142, 550, 1533
ArsI	GACNNNNNNTTYG	2 cut(s)	921, 953
AsiGI	ACCGGT	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	1367
AspS9I	GGNCC	5 cut(s)	406, 481, 592, 650, 651
AsuC2I	CCSGG	2 cut(s)	320, 377
AsuHPI	GGTGA	3 cut(s)	340, 1307, 1508
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	481, 592
AxyI	CCTNAGG	1 cut(s)	1551
BaeGI	GKGCMC	1 cut(s)	654
BalI	TGGCCA	3 cut(s)	476, 563, 1403
BanII	GRGCYC	1 cut(s)	654
BauI	CACGAG	1 cut(s)	789
BbsI	GAAGAC	3 cut(s)	217, 399, 1610
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	8 cut(s)	175, 178, 181, 184, 334, 1168, 1545, 1634
BceAI	ACGGC	2 cut(s)	188, 206
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	89, 1444
BclI	TGATCA	2 cut(s)	213, 1297
BcnI	CCSGG	2 cut(s)	320, 377
BcoDI	GTCTC	2 cut(s)	805, 829
BfaI	CTAG	4 cut(s)	935, 1133, 1139, 1677
BfmI	CTRYAG	1 cut(s)	1066
BfuAI	ACCTGC	1 cut(s)	785
BglI	GCCNNNNNGGC	1 cut(s)	569
Bme1390I	CCNGG	4 cut(s)	89, 320, 377, 1444
Bme18I	GGWCC	2 cut(s)	481, 592
BmgBI	CACGTC	1 cut(s)	1608
BmgT120I	GGNCC	5 cut(s)	406, 481, 592, 650, 651
BmiI	GGNNCC	6 cut(s)	324, 407, 483, 594, 652, 1230
BmrFI	CCNGG	4 cut(s)	89, 320, 377, 1444
BmrI	ACTGGG	1 cut(s)	1483
BmsI	GCATC	5 cut(s)	468, 678, 915, 1111, 1531
BmuI	ACTGGG	1 cut(s)	1483
BpiI	GAAGAC	3 cut(s)	217, 399, 1610
Bpu14I	TTCGAA	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	320, 377
Bsa29I	ATCGAT	2 cut(s)	462, 1119
BsaAI	YACGTR	1 cut(s)	1079
BsaI	GGTCTC	1 cut(s)	805
BsaJI	CCNNGG	4 cut(s)	477, 654, 1343, 1442
BsaWI	WCCGGW	4 cut(s)	178, 325, 421, 1518
Bsc4I	CCNNNNNNNGG	6 cut(s)	325, 602, 725, 996, 1289, 1571
Bse118I	RCCGGY	2 cut(s)	178, 977
Bse1I	ACTGG	3 cut(s)	477, 1478, 1658
Bse21I	CCTNAGG	1 cut(s)	1551
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	89, 1444
BseCI	ATCGAT	2 cut(s)	462, 1119
BseDI	CCNNGG	4 cut(s)	477, 654, 1343, 1442
BseGI	GGATG	7 cut(s)	535, 594, 968, 1001, 1006, 1452, 1483
BseLI	CCNNNNNNNGG	6 cut(s)	325, 602, 725, 996, 1289, 1571
BseMII	CTCAG	3 cut(s)	711, 879, 1524
BseNI	ACTGG	3 cut(s)	477, 1478, 1658
BseRI	GAGGAG	6 cut(s)	10, 13, 86, 600, 853, 932
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	8 cut(s)	175, 178, 181, 184, 334, 1168, 1545, 1634
Bsh1236I	CGCG	1 cut(s)	1502
Bsh1285I	CGRYCG	1 cut(s)	833
BshFI	GGCC	6 cut(s)	408, 476, 563, 652, 981, 1403
BshTI	ACCGGT	1 cut(s)	178
BshVI	ATCGAT	2 cut(s)	462, 1119
BsiEI	CGRYCG	1 cut(s)	833
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	9 cut(s)	179, 320, 326, 377, 422, 978, 993, 1212, 1519
BslFI	GGGAC	2 cut(s)	467, 505
BslI	CCNNNNNNNGG	6 cut(s)	325, 602, 725, 996, 1289, 1571
BsmAI	GTCTC	2 cut(s)	805, 829
BsmFI	GGGAC	2 cut(s)	467, 505
BsnI	GGCC	6 cut(s)	408, 476, 563, 652, 981, 1403
Bso31I	GGTCTC	1 cut(s)	805
Bsp119I	TTCGAA	1 cut(s)	8
Bsp120I	GGGCCC	1 cut(s)	650
Bsp1286I	GDGCHC	2 cut(s)	610, 654
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	4 cut(s)	213, 352, 641, 1297
Bsp19I	CCATGG	1 cut(s)	654
Bsp68I	TCGCGA	1 cut(s)	1502
BspACI	CCGC	4 cut(s)	409, 572, 990, 1184
BspANI	GGCC	6 cut(s)	408, 476, 563, 652, 981, 1403
BspCNI	CTCAG	3 cut(s)	712, 878, 1523
BspDI	ATCGAT	2 cut(s)	462, 1119
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	1502
BspLI	GGNNCC	6 cut(s)	324, 407, 483, 594, 652, 1230
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	1 cut(s)	649
BspT104I	TTCGAA	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	805
BsrFI	RCCGGY	2 cut(s)	178, 977
BsrI	ACTGG	3 cut(s)	477, 1478, 1658
BssAI	RCCGGY	2 cut(s)	178, 977
BssECI	CCNNGG	4 cut(s)	477, 654, 1343, 1442
BssMI	GATC	4 cut(s)	213, 352, 641, 1297
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	3 cut(s)	477, 654, 1343
Bst2BI	CACGAG	1 cut(s)	789
Bst2UI	CCWGG	2 cut(s)	89, 1444
Bst4CI	ACNGT	3 cut(s)	622, 853, 1487
Bst6I	CTCTTC	2 cut(s)	37, 1589
BstAPI	GCANNNNNTGC	1 cut(s)	745
BstBAI	YACGTR	1 cut(s)	1079
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	15, 54, 979
BstDEI	CTNAG	5 cut(s)	682, 720, 865, 1510, 1551
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	7 cut(s)	535, 594, 968, 1001, 1006, 1452, 1483
BstFNI	CGCG	1 cut(s)	1502
BstKTI	GATC	4 cut(s)	216, 355, 644, 1300
BstMAI	GTCTC	2 cut(s)	805, 829
BstMBI	GATC	4 cut(s)	213, 352, 641, 1297
BstMCI	CGRYCG	1 cut(s)	833
BstMWI	GCNNNNNNNGC	6 cut(s)	169, 172, 569, 745, 1555, 1631
BstNI	CCWGG	2 cut(s)	89, 1444
BstNSI	RCATGY	4 cut(s)	56, 842, 1246, 1397
BstSCI	CCNGG	4 cut(s)	87, 318, 375, 1442
BstSFI	CTRYAG	1 cut(s)	1066
BstSLI	GKGCMC	1 cut(s)	654
BstUI	CGCG	1 cut(s)	1502
BstV1I	GCAGC	8 cut(s)	175, 178, 181, 184, 334, 1168, 1545, 1634
BstV2I	GAAGAC	3 cut(s)	217, 399, 1610
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
Bsu15I	ATCGAT	2 cut(s)	462, 1119
Bsu36I	CCTNAGG	1 cut(s)	1551
BsuRI	GGCC	6 cut(s)	408, 476, 563, 652, 981, 1403
BsuTUI	ATCGAT	2 cut(s)	462, 1119
BtgI	CCRYGG	1 cut(s)	654
BtgZI	GCGATG	1 cut(s)	958
BtrI	CACGTC	1 cut(s)	1608
BtsCI	GGATG	7 cut(s)	535, 594, 968, 1001, 1006, 1452, 1483
BtsIMutI	CAGTG	1 cut(s)	1651
BtuMI	TCGCGA	1 cut(s)	1502
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	3 cut(s)	15, 54, 979
Cfr10I	RCCGGY	2 cut(s)	178, 977
Cfr13I	GGNCC	5 cut(s)	406, 481, 592, 650, 651
ClaI	ATCGAT	2 cut(s)	462, 1119
CseI	GACGC	2 cut(s)	680, 1018
Csp6I	GTAC	4 cut(s)	92, 625, 820, 1421
CspAI	ACCGGT	1 cut(s)	178
CviQI	GTAC	4 cut(s)	92, 625, 820, 1421
DdeI	CTNAG	5 cut(s)	682, 720, 865, 1510, 1551
DpnI	GATC	4 cut(s)	215, 354, 643, 1299
DpnII	GATC	4 cut(s)	213, 352, 641, 1297
DrdI	GACNNNNNNGTC	1 cut(s)	1133
DseDI	GACNNNNNNGTC	1 cut(s)	1133
EaeI	YGGCCR	3 cut(s)	474, 561, 1401
Eam1104I	CTCTTC	2 cut(s)	37, 1589
EarI	CTCTTC	2 cut(s)	37, 1589
Eco130I	CCWWGG	3 cut(s)	477, 654, 1343
Eco24I	GRGCYC	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	805
Eco47I	GGWCC	2 cut(s)	481, 592
Eco57I	CTGAAG	2 cut(s)	755, 1457
Eco81I	CCTNAGG	1 cut(s)	1551
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	87, 1442
EcoT14I	CCWWGG	3 cut(s)	477, 654, 1343
EcoT22I	ATGCAT	3 cut(s)	300, 1244, 1360
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	3 cut(s)	477, 654, 1343
FaqI	GGGAC	2 cut(s)	467, 505
FbaI	TGATCA	2 cut(s)	213, 1297
FblI	GTMKAC	2 cut(s)	273, 1482
FokI	GGATG	7 cut(s)	542, 601, 955, 1008, 1013, 1459, 1490
FriOI	GRGCYC	1 cut(s)	654
FspBI	CTAG	4 cut(s)	935, 1133, 1139, 1677
HaeIII	GGCC	6 cut(s)	408, 476, 563, 652, 981, 1403
HapII	CCGG	9 cut(s)	179, 320, 326, 377, 422, 978, 993, 1212, 1519
HgaI	GACGC	2 cut(s)	680, 1018
HincII	GTYRAC	2 cut(s)	208, 268
HindII	GTYRAC	2 cut(s)	208, 268
HindIII	AAGCTT	1 cut(s)	804
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	9 cut(s)	179, 320, 326, 377, 422, 978, 993, 1212, 1519
HphI	GGTGA	3 cut(s)	340, 1307, 1508
Hpy166II	GTNNAC	6 cut(s)	208, 268, 274, 625, 770, 1483
Hpy188I	TCNGA	8 cut(s)	113, 357, 618, 641, 671, 868, 1025, 1039
Hpy188III	TCNNGA	5 cut(s)	184, 229, 422, 1309, 1501
Hpy8I	GTNNAC	6 cut(s)	208, 268, 274, 625, 770, 1483
Hpy99I	CGWCG	2 cut(s)	152, 162
HpyAV	CCTTC	7 cut(s)	237, 247, 302, 508, 512, 736, 1139
HpyCH4III	ACNGT	3 cut(s)	622, 853, 1487
HpyCH4IV	ACGT	6 cut(s)	210, 270, 627, 876, 1078, 1607
HpyCH4V	TGCA	8 cut(s)	298, 788, 887, 1124, 1242, 1358, 1418, 1561
HpyF10VI	GCNNNNNNNGC	6 cut(s)	169, 172, 569, 745, 1555, 1631
HpyF3I	CTNAG	5 cut(s)	682, 720, 865, 1510, 1551
HpySE526I	ACGT	6 cut(s)	210, 270, 627, 876, 1078, 1607
Kpn2I	TCCGGA	1 cut(s)	421
KroI	GCCGGC	1 cut(s)	977
KroNI	GCCGGC	1 cut(s)	979
Ksp22I	TGATCA	2 cut(s)	213, 1297
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	213, 352, 641, 1297
LmnI	GCTCC	2 cut(s)	613, 1555
Lsp1109I	GCAGC	8 cut(s)	175, 178, 181, 184, 334, 1168, 1545, 1634
LweI	GCATC	5 cut(s)	468, 678, 915, 1111, 1531
MaeI	CTAG	4 cut(s)	935, 1133, 1139, 1677
MaeII	ACGT	6 cut(s)	210, 270, 627, 876, 1078, 1607
MaeIII	GTNAC	6 cut(s)	540, 847, 1451, 1469, 1505, 1649
MalI	GATC	4 cut(s)	215, 354, 643, 1299
MboI	GATC	4 cut(s)	213, 352, 641, 1297
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	2 cut(s)	610, 654
MlsI	TGGCCA	3 cut(s)	476, 563, 1403
MluCI	AATT	7 cut(s)	142, 233, 550, 700, 1172, 1533, 1659
MluNI	TGGCCA	3 cut(s)	476, 563, 1403
MlyI	GAGTC	3 cut(s)	108, 1332, 1502
MmeI	TCCRAC	2 cut(s)	156, 1039
Mox20I	TGGCCA	3 cut(s)	476, 563, 1403
Mph1103I	ATGCAT	3 cut(s)	300, 1244, 1360
MroI	TCCGGA	1 cut(s)	421
MroNI	GCCGGC	1 cut(s)	977
MroXI	GAANNNNTTC	1 cut(s)	1367
MscI	TGGCCA	3 cut(s)	476, 563, 1403
MseI	TTAA	4 cut(s)	71, 207, 1206, 1668
MslI	CAYNNNNRTG	3 cut(s)	464, 843, 1237
Msp20I	TGGCCA	3 cut(s)	476, 563, 1403
MspI	CCGG	9 cut(s)	179, 320, 326, 377, 422, 978, 993, 1212, 1519
MspR9I	CCNGG	4 cut(s)	89, 320, 377, 1444
MvaI	CCWGG	2 cut(s)	89, 1444
MvnI	CGCG	1 cut(s)	1502
MwoI	GCNNNNNNNGC	6 cut(s)	169, 172, 569, 745, 1555, 1631
NaeI	GCCGGC	1 cut(s)	979
NciI	CCSGG	2 cut(s)	320, 377
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	4 cut(s)	213, 352, 641, 1297
NgoMIV	GCCGGC	1 cut(s)	977
NlaIV	GGNNCC	6 cut(s)	324, 407, 483, 594, 652, 1230
NmuCI	GTSAC	2 cut(s)	1505, 1649
NruI	TCGCGA	1 cut(s)	1502
NsiI	ATGCAT	3 cut(s)	300, 1244, 1360
NspI	RCATGY	4 cut(s)	56, 842, 1246, 1397
NspV	TTCGAA	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	56
PciI	ACATGT	1 cut(s)	1393
PcsI	WCGNNNNNNNCGW	4 cut(s)	144, 201, 207, 276
PdiI	GCCGGC	1 cut(s)	979
PdmI	GAANNNNTTC	1 cut(s)	1367
PfeI	GAWTC	7 cut(s)	187, 333, 953, 1011, 1020, 1305, 1638
PflFI	GACNNNGTC	1 cut(s)	935
PfoI	TCCNGGA	1 cut(s)	375
PinAI	ACCGGT	1 cut(s)	178
PleI	GAGTC	3 cut(s)	108, 1332, 1502
PpsI	GAGTC	3 cut(s)	108, 1332, 1502
Ppu21I	YACGTR	1 cut(s)	1079
PpuMI	RGGWCCY	1 cut(s)	481
PscI	ACATGT	1 cut(s)	1393
PsiI	TTATAA	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	2 cut(s)	87, 1442
PspGI	CCWGG	2 cut(s)	87, 1442
PspN4I	GGNNCC	6 cut(s)	324, 407, 483, 594, 652, 1230
PspOMI	GGGCCC	1 cut(s)	650
PspPI	GGNCC	5 cut(s)	406, 481, 592, 650, 651
PspPPI	RGGWCCY	1 cut(s)	481
PsrI	GAACNNNNNNTAC	2 cut(s)	617, 649
PsuI	RGATCY	1 cut(s)	641
PsyI	GACNNNGTC	1 cut(s)	935
RruI	TCGCGA	1 cut(s)	1502
RsaI	GTAC	4 cut(s)	93, 626, 821, 1422
RsaNI	GTAC	4 cut(s)	92, 625, 820, 1421
RseI	CAYNNNNRTG	3 cut(s)	464, 843, 1237
SaqAI	TTAA	4 cut(s)	71, 207, 1206, 1668
Sau3AI	GATC	4 cut(s)	213, 352, 641, 1297
Sau96I	GGNCC	5 cut(s)	406, 481, 592, 650, 651
SchI	GAGTC	3 cut(s)	108, 1332, 1502
ScrFI	CCNGG	4 cut(s)	89, 320, 377, 1444
SduI	GDGCHC	2 cut(s)	610, 654
SfaNI	GCATC	5 cut(s)	468, 678, 915, 1111, 1531
SfcI	CTRYAG	1 cut(s)	1066
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	2 cut(s)	481, 592
SmiMI	CAYNNNNRTG	3 cut(s)	464, 843, 1237
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	7 cut(s)	142, 233, 550, 700, 1172, 1533, 1659
SsiI	CCGC	4 cut(s)	409, 572, 990, 1184
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	4 cut(s)	935, 1133, 1139, 1677
StyD4I	CCNGG	4 cut(s)	87, 318, 375, 1442
StyI	CCWWGG	3 cut(s)	477, 654, 1343
TaaI	ACNGT	3 cut(s)	622, 853, 1487
TaiI	ACGT	6 cut(s)	213, 273, 630, 879, 1081, 1610
TaqI	TCGA	7 cut(s)	8, 336, 462, 1119, 1278, 1371, 1386
TaqII	GACCGA	1 cut(s)	847
TasI	AATT	7 cut(s)	142, 233, 550, 700, 1172, 1533, 1659
TatI	WGTACW	2 cut(s)	819, 1420
TauI	GCSGC	4 cut(s)	411, 575, 992, 1187
TfiI	GAWTC	7 cut(s)	187, 333, 953, 1011, 1020, 1305, 1638
Tru1I	TTAA	4 cut(s)	71, 207, 1206, 1668
Tru9I	TTAA	4 cut(s)	71, 207, 1206, 1668
TscAI	CASTG	1 cut(s)	1658
TseFI	GTSAC	2 cut(s)	1505, 1649
TseI	GCWGC	8 cut(s)	163, 166, 169, 172, 347, 1181, 1558, 1622
Tsp45I	GTSAC	2 cut(s)	1505, 1649
TspDTI	ATGAA	5 cut(s)	93, 266, 625, 1038, 1105
TspRI	CASTG	1 cut(s)	1658
Tth111I	GACNNNGTC	1 cut(s)	935
VpaK11BI	GGWCC	2 cut(s)	481, 592
XapI	RAATTY	3 cut(s)	142, 550, 1533
XceI	RCATGY	4 cut(s)	56, 842, 1246, 1397
XmiI	GTMKAC	2 cut(s)	273, 1482
XmnI	GAANNNNTTC	1 cut(s)	1367
XspI	CTAG	4 cut(s)	935, 1133, 1139, 1677
Zsp2I	ATGCAT	3 cut(s)	300, 1244, 1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.