RLG00000028989

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
31133579 .. 31134007
429 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028989

Sequence Viewer

Length: 306 bp
ATGGCCTCTGGTCTCTTCGGTGGGCTGTGGATGCTGCCGAACAGGCGTGGTTGGGTGGTGGTCAGCGGTGGGGTTGCAGCAAGAAACTCTCTTTCATCTTATGACGGTGGCGACAGTGGCTTCATGATTCAAGTTTTGGTGGTCAACCGCAAGTTTGGTGGGATTGGTTTGGCTGTGTTTGACGGGTCACTAAGATCTGGGTTGATCTTTGAAGGCTACATCAGTTTTGGAGGGTTTGATAAAGTGGCTGGTGAGTATATGGATTTGGGGCAAACTTTGGGTGATCTGGACTTGATGTCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.64

Weight (kDa)

4.72

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 66, 148
AgsI TTSAA 2 cut(s) 131, 212
AhdI GACNNNNNGTC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 17
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 34, 77
AsuHPI GGTGA 2 cut(s) 263, 293
BbvI GCAGC 2 cut(s) 21, 89
BcoDI GTCTC 1 cut(s) 17
BglI GCCNNNNNGGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 194
BisI GCNGC 2 cut(s) 35, 78
BlsI GCNGC 2 cut(s) 36, 79
BmeRI GACNNNNNGTC 1 cut(s) 295
BmsI GCATC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 17
BseGI GGATG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 21, 89
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 194, 204, 283
BspACI CCGC 2 cut(s) 66, 148
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 17
BssMI GATC 3 cut(s) 194, 204, 283
Bst4CI ACNGT 2 cut(s) 107, 116
Bst6I CTCTTC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 3 cut(s) 197, 207, 286
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 3 cut(s) 194, 204, 283
BstMWI GCNNNNNNNGC 3 cut(s) 31, 43, 117
BstV1I GCAGC 2 cut(s) 21, 89
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 121
CciI TCATGA 1 cut(s) 123
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 1 cut(s) 124
CviJI RGCY 6 cut(s) 5, 25, 120, 173, 216, 248
CviKI_1 RGCY 6 cut(s) 5, 25, 120, 173, 216, 248
DdeI CTNAG 1 cut(s) 191
DpnI GATC 3 cut(s) 196, 206, 285
DpnII GATC 3 cut(s) 194, 204, 283
DriI GACNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 20
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 17
FaeI CATG 1 cut(s) 127
FaiI YATR 4 cut(s) 102, 125, 258, 260
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 35, 78
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 35, 78
GluI GCNGC 2 cut(s) 35, 78
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 127
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 127
HphI GGTGA 2 cut(s) 263, 293
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 124, 287
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 107, 116
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 43, 117
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 3 cut(s) 194, 204, 283
LpnPI CCDG 4 cut(s) 28, 183, 234, 272
Lsp1109I GCAGC 2 cut(s) 21, 89
LweI GCATC 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 186
MalI GATC 3 cut(s) 196, 206, 285
MboI GATC 3 cut(s) 194, 204, 283
MboII GAAGA 1 cut(s) 7
MflI RGATCY 1 cut(s) 194
MnlI CCTC 2 cut(s) 16, 224
MspA1I CMGCKG 1 cut(s) 66
MwoI GCNNNNNNNGC 3 cut(s) 31, 43, 117
NdeII GATC 3 cut(s) 194, 204, 283
NlaIII CATG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 186
PagI TCATGA 1 cut(s) 123
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 36, 79
PsuI RGATCY 1 cut(s) 194
SatI GCNGC 2 cut(s) 35, 78
Sau3AI GATC 3 cut(s) 194, 204, 283
SfaNI GCATC 1 cut(s) 21
SsiI CCGC 2 cut(s) 66, 148
TaaI ACNGT 2 cut(s) 107, 116
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 2 cut(s) 34, 77
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 2 cut(s) 84, 112
TspRI CASTG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.