Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

6655558 .. 6656258

Gene Structure 701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCATCAGAGCAAGAAAGAAGAGATCCCCAGAAAAGGGCGGAACTGGAAGAGAAAGCAAAGCTGGGAGAGACTGTGGTTCCTGGTGGAACTGGTGGTTTTAGCGTTGAAGCTCAGGAGCATCTTGCTGAAGGACGACGCAAGGGAGGGGGGAGGGGAGGGCGGACTAGGAAGGAGGCTGAGGTGATAGGCCCAAGAGACGAGTCTGGAGAAGAGCGGGCTGATGACGAAGAAGGCGTTACAGACATGCACGAAACAAATAGTCGCTCACTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

93

Amino Acids

10.05

Weight (kDa)

5.14

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 59	1.1e-14	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	217
AciI	CCGC	3 cut(s)	41, 163, 217
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	36, 37
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	64, 113
AluI	AGCT	2 cut(s)	64, 113
Alw26I	GTCTC	2 cut(s)	65, 192
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	65, 192
BfaI	CTAG	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	14, 130
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	2 cut(s)	114, 180
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 37
Bse1I	ACTGG	2 cut(s)	51, 97
BseBI	CCWGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	36, 37
BseMII	CTCAG	2 cut(s)	128, 171
BseNI	ACTGG	2 cut(s)	51, 97
BseYI	CCCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	36, 37
BsmAI	GTCTC	2 cut(s)	65, 192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	3 cut(s)	41, 163, 217
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	127, 172
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	51, 97
BssMI	GATC	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	3 cut(s)	16, 45, 207
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	114, 180
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	65, 192
BstMBI	GATC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	147
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	5 cut(s)	64, 113, 179, 192, 221
CviKI_1	RGCY	5 cut(s)	64, 113, 179, 192, 221
DdeI	CTNAG	2 cut(s)	114, 180
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	3 cut(s)	16, 45, 207
EarI	CTCTTC	3 cut(s)	16, 45, 207
EciI	GGCGGA	2 cut(s)	56, 178
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	1 cut(s)	250
FaiI	YATR	1 cut(s)	248
FatI	CATG	1 cut(s)	246
FauI	CCCGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	192
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	250
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	116, 207
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	3 cut(s)	125, 166, 227
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	114, 180
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	32, 44, 50, 69, 78, 96, 101, 192
LweI	GCATC	2 cut(s)	14, 130
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	27
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	1 cut(s)	25
MboII	GAAGA	4 cut(s)	33, 62, 224, 242
MflI	RGATCY	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	5 cut(s)	140, 147, 152, 169, 175
MslI	CAYNNNNRTG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	81
NspI	RCATGY	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	3 cut(s)	66, 115, 186
SfaNI	GCATC	2 cut(s)	14, 130
SmiMI	CAYNNNNRTG	1 cut(s)	274
SsiI	CCGC	3 cut(s)	41, 163, 217
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	76
TscAI	CASTG	1 cut(s)	276
TspRI	CASTG	1 cut(s)	276
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.