Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

10280125 .. 10280476

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCATCGGAACAGGAGAGAAGGAATCCGCAGAAAAGGGCAGAGCTGGAAGAAAAAGCAAGGCGGGGAGAGACTGTTGTTCCTGGTGGAACTGCTGGAAAGAGTCTTGAAGCTCAAGAACACCTTGCTGAAGGGCGACACAAGGGAGGCGAGACGAGGCCGGAGGGAGCAGATAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

60

Amino Acids

6.57

Weight (kDa)

6.74

Isoelectric Point (pI)

73.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 55	1.1e-18	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 64
AcuI	CTGAAG	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	46, 113
AluI	AGCT	2 cut(s)	46, 113
Alw26I	GTCTC	2 cut(s)	65, 146
AoxI	GGCC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	65, 146
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
BseBI	CCWGG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	65, 146
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	29, 64
BspANI	GGCC	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	65, 146
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	179
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	3 cut(s)	46, 113, 160
CviKI_1	RGCY	3 cut(s)	46, 113, 160
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	183
FaiI	YATR	1 cut(s)	181
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	1 cut(s)	179
FauI	CCCGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	183
HinfI	GANTC	2 cut(s)	25, 103
HpaII	CCGG	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	3 cut(s)	107, 116, 180
HpyAV	CCTTC	2 cut(s)	15, 125
HpyCH4III	ACNGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	32, 69, 81, 96, 174
LweI	GCATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	140, 150, 157
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
NlaIII	CATG	1 cut(s)	183
PagI	TCATGA	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	4 cut(s)	48, 115, 126, 179
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SsiI	CCGC	2 cut(s)	29, 64
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.