Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

6663522 .. 6664513

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCATCGGAGCAGGAAAGAAGGGATCCACAGAAGAGAGAGGATCTGGACGAGAAAGCGAAGCAGGGGGAGACTGTTGTTCCTGGTGGAACTGGTGGCCACAGCCTTAAAGCTCAAGAACACCTTGCCGAAGGGCGCCACCGTGGAGGCGAGATTAGGAAGGAGCAGCTGGGACGTGAAGGGTACCAGGAGATCGGCCACCGCGGAGGCGAGACCAGGAAGGAGCAGCTGGGACGTGAAGGATACCAGGAGATCGGCCACCGCGGAGGCGAGACCAGGAAGGAGCAGCTGGGACGTGAAGGGTACCAGCAAATGGGGAAAGAAGGAGGGGAGACCAGGAAGGAGCAGCTGGGTCATGAAGGGTACCAGGAGATGGGAAAGAAAGGAGGACTGAGCACCAAGGACAAGTCTGGAGGAGAGCGTGCTGCTGAGGAAGGCATCCCAATTGACGAGTCGAAGTTCAAAACTAGGACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

160

Amino Acids

17.68

Weight (kDa)

6.62

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 90	2.8e-35	Small hydrophilic plant seed protein
LEA_5	PF00477	88 - 154	3.7e-30	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	183, 303, 363
AccB1I	GGYRCC	4 cut(s)	135, 183, 303, 363
AccB7I	CCANNNNNTGG	2 cut(s)	313, 373
AccII	CGCG	2 cut(s)	204, 264
AciI	CCGC	4 cut(s)	202, 204, 262, 264
AclWI	GGATC	3 cut(s)	20, 33, 51
AcoI	YGGCCR	3 cut(s)	97, 196, 256
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	3 cut(s)	185, 305, 365
AfiI	CCNNNNNNNGG	2 cut(s)	313, 373
AgsI	TTSAA	1 cut(s)	463
AjiI	CACGTC	3 cut(s)	176, 236, 296
AjnI	CCWGG	7 cut(s)	82, 186, 215, 246, 275, 335, 366
AluBI	AGCT	5 cut(s)	113, 169, 229, 289, 349
AluI	AGCT	5 cut(s)	113, 169, 229, 289, 349
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	4 cut(s)	65, 206, 266, 326
AlwI	GGATC	3 cut(s)	20, 33, 51
AoxI	GGCC	3 cut(s)	97, 196, 256
ApeKI	GCWGC	5 cut(s)	166, 226, 286, 346, 425
Asp718I	GGTACC	3 cut(s)	183, 303, 363
AspLEI	GCGC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	4 cut(s)	135, 183, 303, 363
Bbv12I	GWGCWC	1 cut(s)	398
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	5 cut(s)	178, 238, 298, 358, 412
BccI	CCATC	1 cut(s)	367
BciT130I	CCWGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	4 cut(s)	65, 206, 266, 326
BfaI	CTAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	5 cut(s)	167, 227, 287, 347, 426
BlsI	GCNGC	5 cut(s)	168, 228, 288, 348, 427
Bme1390I	CCNGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
BmgBI	CACGTC	3 cut(s)	176, 236, 296
BmiI	GGNNCC	5 cut(s)	27, 137, 185, 305, 365
BmrFI	CCNGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
BmsI	GCATC	2 cut(s)	14, 447
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	136
BsaI	GGTCTC	3 cut(s)	206, 266, 326
BsaJI	CCNNGG	4 cut(s)	142, 202, 262, 399
BsaXI	ACNNNNNCTCC	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 373
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
BseDI	CCNNGG	4 cut(s)	142, 202, 262, 399
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	313, 373
BseMII	CTCAG	2 cut(s)	383, 420
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	178, 238, 298, 358, 412
BseYI	CCCAGC	4 cut(s)	169, 229, 289, 349
Bsh1236I	CGCG	2 cut(s)	204, 264
BshFI	GGCC	3 cut(s)	99, 198, 258
BshNI	GGYRCC	4 cut(s)	135, 183, 303, 363
BsiHKAI	GWGCWC	1 cut(s)	398
BslFI	GGGAC	3 cut(s)	186, 246, 306
BslI	CCNNNNNNNGG	2 cut(s)	313, 373
BsmAI	GTCTC	4 cut(s)	65, 206, 266, 326
BsmFI	GGGAC	3 cut(s)	186, 246, 306
BsnI	GGCC	3 cut(s)	99, 198, 258
Bso31I	GGTCTC	3 cut(s)	206, 266, 326
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	4 cut(s)	25, 43, 192, 252
BspACI	CCGC	4 cut(s)	202, 204, 262, 264
BspANI	GGCC	3 cut(s)	99, 198, 258
BspCNI	CTCAG	2 cut(s)	384, 421
BspFNI	CGCG	2 cut(s)	204, 264
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	5 cut(s)	27, 137, 185, 305, 365
BspPI	GGATC	3 cut(s)	20, 33, 51
BspT107I	GGYRCC	4 cut(s)	135, 183, 303, 363
BspTNI	GGTCTC	3 cut(s)	206, 266, 326
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	142, 202, 262, 399
BssMI	GATC	4 cut(s)	25, 43, 192, 252
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
Bst4CI	ACNGT	2 cut(s)	76, 143
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	392, 429
BstDSI	CCRYGG	3 cut(s)	142, 202, 262
BstF5I	GGATG	1 cut(s)	438
BstFNI	CGCG	2 cut(s)	204, 264
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	4 cut(s)	28, 46, 195, 255
BstMAI	GTCTC	4 cut(s)	65, 206, 266, 326
BstMBI	GATC	4 cut(s)	25, 43, 192, 252
BstNI	CCWGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
BstSCI	CCNGG	7 cut(s)	82, 186, 215, 246, 275, 335, 366
BstUI	CGCG	2 cut(s)	204, 264
BstV1I	GCAGC	5 cut(s)	178, 238, 298, 358, 412
BstX2I	RGATCY	2 cut(s)	25, 43
BstYI	RGATCY	2 cut(s)	25, 43
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	3 cut(s)	99, 198, 258
BtgI	CCRYGG	3 cut(s)	142, 202, 262
BtrI	CACGTC	3 cut(s)	176, 236, 296
BtsCI	GGATG	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	423
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	138
Cfr42I	CCGCGG	2 cut(s)	205, 265
Csp6I	GTAC	3 cut(s)	184, 304, 364
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	9 cut(s)	99, 105, 113, 169, 198, 229, 258, 289, 349
CviKI_1	RGCY	9 cut(s)	99, 105, 113, 169, 198, 229, 258, 289, 349
CviQI	GTAC	3 cut(s)	184, 304, 364
DdeI	CTNAG	2 cut(s)	392, 429
DinI	GGCGCC	1 cut(s)	137
DpnI	GATC	4 cut(s)	27, 45, 194, 254
DpnII	GATC	4 cut(s)	25, 43, 192, 252
EaeI	YGGCCR	3 cut(s)	97, 196, 256
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	3 cut(s)	206, 266, 326
EcoRII	CCWGG	7 cut(s)	82, 186, 215, 246, 275, 335, 366
EcoT14I	CCWWGG	1 cut(s)	399
EgeI	GGCGCC	1 cut(s)	137
EheI	GGCGCC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	1 cut(s)	359
FaiI	YATR	1 cut(s)	357
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	3 cut(s)	186, 246, 306
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	167, 227, 287, 347, 426
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	5 cut(s)	167, 227, 287, 347, 426
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	5 cut(s)	167, 227, 287, 347, 426
GsaI	CCCAGC	4 cut(s)	173, 233, 293, 353
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	99, 198, 258
HhaI	GCGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	452, 472
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	47, 116, 356, 411
HpyCH4III	ACNGT	2 cut(s)	76, 143
HpyCH4IV	ACGT	3 cut(s)	175, 235, 295
HpyF3I	CTNAG	2 cut(s)	392, 429
HpySE526I	ACGT	3 cut(s)	175, 235, 295
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	136
KasI	GGCGCC	1 cut(s)	135
KpnI	GGTACC	3 cut(s)	187, 307, 367
KspI	CCGCGG	2 cut(s)	205, 265
Kzo9I	GATC	4 cut(s)	25, 43, 192, 252
LmnI	GCTCC	5 cut(s)	10, 163, 223, 283, 343
Lsp1109I	GCAGC	5 cut(s)	178, 238, 298, 358, 412
LweI	GCATC	2 cut(s)	14, 447
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	3 cut(s)	175, 235, 295
MalI	GATC	4 cut(s)	27, 45, 194, 254
MboI	GATC	4 cut(s)	25, 43, 192, 252
MboII	GAAGA	1 cut(s)	46
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	2 cut(s)	25, 43
MhlI	GDGCHC	1 cut(s)	398
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	461, 466
MnlI	CCTC	8 cut(s)	34, 140, 200, 260, 320, 380, 407, 424
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	6 cut(s)	169, 204, 229, 264, 289, 349
MspR9I	CCNGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
MvnI	CGCG	2 cut(s)	204, 264
NarI	GGCGCC	1 cut(s)	136
NdeII	GATC	4 cut(s)	25, 43, 192, 252
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	5 cut(s)	27, 137, 185, 305, 365
PagI	TCATGA	1 cut(s)	355
PflMI	CCANNNNNTGG	2 cut(s)	313, 373
PkrI	GCNGC	5 cut(s)	168, 228, 288, 348, 427
PleI	GAGTC	2 cut(s)	460, 466
PluTI	GGCGCC	1 cut(s)	139
PpsI	GAGTC	2 cut(s)	460, 466
Psp6I	CCWGG	7 cut(s)	82, 186, 215, 246, 275, 335, 366
PspFI	CCCAGC	4 cut(s)	169, 229, 289, 349
PspGI	CCWGG	7 cut(s)	82, 186, 215, 246, 275, 335, 366
PspN4I	GGNNCC	5 cut(s)	27, 137, 185, 305, 365
PsuI	RGATCY	2 cut(s)	25, 43
PvuII	CAGCTG	4 cut(s)	169, 229, 289, 349
RsaI	GTAC	3 cut(s)	185, 305, 365
RsaNI	GTAC	3 cut(s)	184, 304, 364
SacII	CCGCGG	2 cut(s)	205, 265
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	5 cut(s)	167, 227, 287, 347, 426
Sau3AI	GATC	4 cut(s)	25, 43, 192, 252
SchI	GAGTC	2 cut(s)	461, 466
ScrFI	CCNGG	7 cut(s)	84, 188, 217, 248, 277, 337, 368
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	9 cut(s)	115, 126, 171, 178, 231, 238, 291, 298, 351
SfaNI	GCATC	2 cut(s)	14, 447
SfoI	GGCGCC	1 cut(s)	137
Sfr303I	CCGCGG	2 cut(s)	205, 265
SgrBI	CCGCGG	2 cut(s)	205, 265
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	4 cut(s)	202, 204, 262, 264
SspDI	GGCGCC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	7 cut(s)	82, 186, 215, 246, 275, 335, 366
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	76, 143
TaiI	ACGT	3 cut(s)	178, 238, 298
TaqI	TCGA	1 cut(s)	455
TasI	AATT	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	5 cut(s)	166, 226, 286, 346, 425
TspDTI	ATGAA	1 cut(s)	372
Van91I	CCANNNNNTGG	2 cut(s)	313, 373
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.