Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Reverse (-)

19007645 .. 19008026

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCTTCGCAGCAGAAAAGGGCTGAGCTGGACGAGAGGGCTAGGCGAGGAGAGACTGTGATACCCGGCGGGACTGGCGGCAAAAGCCTTCGAGCTCAGGAACACCTTGCTGAAGGGAGGAGGAAAGGAGGGCAGACGAGGAAGGACCAGATAGGGAAGGAAGGGTACCAGGAGATGGGCCGCAAGGGAGGGCTGAGCACCGGAGATGAGTCCGGTGGAGAGCGCGCCGCCCGGGAGGGTATTACGATTGACGAGTCCAAGTACAAGACCAAGAGCAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0022414 GO:0031647 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050821 GO:0050896 GO:0061458 GO:0065007 GO:0065008 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_5

Protein Analysis

95

Amino Acids

10.21

Weight (kDa)

9.57

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	2 - 56	7.6e-24	Small hydrophilic plant seed protein
LEA_5	PF00477	42 - 88	1.9e-21	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccII	CGCG	1 cut(s)	225
AciI	CCGC	4 cut(s)	69, 78, 181, 228
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	167, 263
AfiI	CCNNNNNNNGG	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	28, 95
AluI	AGCT	2 cut(s)	28, 95
Alw21I	GWGCWC	2 cut(s)	97, 200
Alw26I	GTCTC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	225, 227
AspS9I	GGNCC	2 cut(s)	145, 178
AsuC2I	CCSGG	3 cut(s)	66, 232, 233
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
Bbv12I	GWGCWC	2 cut(s)	97, 200
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	3 cut(s)	66, 232, 233
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	4 cut(s)	11, 79, 181, 228
BlpI	GCTNAGC	2 cut(s)	24, 194
BlsI	GCNGC	4 cut(s)	12, 80, 182, 229
Bme1390I	CCNGG	4 cut(s)	66, 170, 232, 233
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	145, 178
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	4 cut(s)	66, 170, 232, 233
Bpu10I	CCTNAGC	1 cut(s)	96
Bpu1102I	GCTNAGC	2 cut(s)	24, 194
BpuMI	CCSGG	3 cut(s)	66, 232, 233
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	2 cut(s)	200, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	3 cut(s)	15, 110, 185
BseNI	ACTGG	1 cut(s)	79
BsePI	GCGCGC	1 cut(s)	223
BseRI	GAGGAG	2 cut(s)	63, 133
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	97, 200
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	66, 201, 213, 232
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	97, 200
Bsp1720I	GCTNAGC	2 cut(s)	24, 194
BspACI	CCGC	4 cut(s)	69, 78, 181, 228
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	16, 109, 186
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	231
BssHII	GCGCGC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	24, 96, 194
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	225, 227
BstMAI	GTCTC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 84
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	4 cut(s)	64, 168, 230, 231
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	2 cut(s)	225, 227
Cfr13I	GGNCC	2 cut(s)	145, 178
Cfr9I	CCCGGG	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	166, 262
CviJI	RGCY	8 cut(s)	5, 23, 28, 41, 87, 95, 180, 193
CviKI_1	RGCY	8 cut(s)	5, 23, 28, 41, 87, 95, 180, 193
CviQI	GTAC	2 cut(s)	166, 262
DdeI	CTNAG	3 cut(s)	24, 96, 194
Ecl136II	GAGCTC	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	97
FaqI	GGGAC	1 cut(s)	85
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	11, 79, 181, 228
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	4 cut(s)	11, 79, 181, 228
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	224, 226
GluI	GCNGC	4 cut(s)	11, 79, 181, 228
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	4 cut(s)	66, 201, 213, 232
HhaI	GCGC	2 cut(s)	225, 227
Hin6I	GCGC	2 cut(s)	223, 225
HinP1I	GCGC	2 cut(s)	223, 225
HinfI	GANTC	2 cut(s)	209, 254
HpaII	CCGG	4 cut(s)	66, 201, 213, 232
Hpy188III	TCNNGA	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	98, 107, 136, 151, 155
HpyCH4III	ACNGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 84
HpyF3I	CTNAG	3 cut(s)	24, 96, 194
HspAI	GCGC	2 cut(s)	223, 225
KpnI	GGTACC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	97, 200
MlyI	GAGTC	2 cut(s)	218, 263
MnlI	CCTC	8 cut(s)	30, 41, 111, 114, 122, 132, 182, 229
MspI	CCGG	4 cut(s)	66, 201, 213, 232
MspR9I	CCNGG	4 cut(s)	66, 170, 232, 233
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	75, 84
NciI	CCSGG	3 cut(s)	66, 232, 233
NlaIV	GGNNCC	1 cut(s)	167
PauI	GCGCGC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	12, 80, 182, 229
PleI	GAGTC	2 cut(s)	217, 262
PpsI	GAGTC	2 cut(s)	217, 262
Psp124BI	GAGCTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	145, 178
PteI	GCGCGC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	167, 263
RsaNI	GTAC	2 cut(s)	166, 262
SacI	GAGCTC	1 cut(s)	97
SatI	GCNGC	4 cut(s)	11, 79, 181, 228
Sau96I	GGNCC	2 cut(s)	145, 178
SchI	GAGTC	2 cut(s)	218, 263
ScrFI	CCNGG	4 cut(s)	66, 170, 232, 233
SduI	GDGCHC	2 cut(s)	97, 200
SetI	ASST	3 cut(s)	30, 97, 108
SinI	GGWCC	1 cut(s)	145
SmaI	CCCGGG	1 cut(s)	233
SsiI	CCGC	4 cut(s)	69, 78, 181, 228
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	4 cut(s)	64, 168, 230, 231
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	91
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	3 cut(s)	81, 183, 230
TseI	GCWGC	1 cut(s)	10
TspMI	CCCGGG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	145
XmaI	CCCGGG	1 cut(s)	231
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.