Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001002

Physical Location & Seq

Genomic Coordinates Forward (+)

33091296 .. 33091694

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGATCCGATCACACGGTTGCTTGGTTTGTGGAGGGCTGCTGCGCGCGGTTGGGGAAGCATGGTTTGGTTGGTTCGGTTGAAGTGCACGGTCAAAGTAGGATTGGTGGGATTGAAGATCTTCCACGGGGTTGGTGGTGGAGGTTTGGTCTTTGGCCAAGGTGTGTTATTATTGGAGTCGAGCTTACGGAGGCCGTGCATCCCGACTATCTTGCGGCTGAATCCGAGTTGCTAGAGCTGCCATCACGGATGAGGAAAGTTGATGGGTGCGGTCTATTTTGTCGTTTGGTCGGGTTTTATTTTCTGGTTTTGGTTAGGTCTAATTGTCCTTCCTCAATTGAGCGAGGGTTTGGGTGTCTTGGTTTCGTGGTTGTGCCATTGTTATGGTGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

6.4

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40170 AT3G51810 AT3G51810
fragaria_vesca	FvH4_6g11140 FvH4_6g11160 FvH4_6g11170 FvH4_6g11180 FvH4_7g24640
malus_domestica	MD00G1062000.v1.1 MD04G1121100.v1.1
prunus_persica	Prupe.2G252100_v2.0.a1 Prupe.6G280200_v2.0.a1 Prupe.6G280300_v2.0.a1
pyrus_communis	pycom12g16320
rosa_chinensis	RchiOBHm_Chr3g0462601 RchiOBHm_Chr3g0462611 RchiOBHm_Chr3g0462621
rosa_laevigata	RLG00000024845 RLG00000024846 RLG00000028989
rosa_multiflora	Rmu_co8007370.1_g000001 Rmu_co8521225.1_g000002 Rmu_sc0002882.1_g000003 Rmu_sc0002882.1_g000004 Rmu_sc0002882.1_g000006 Rmu_sc0002882.1_g000007 Rmu_sc0003624.1_g000025 Rmu_sc0003624.1_g000026 Rmu_sc0006766.1_g000011 Rmu_sc0015198.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269140 Rroxscaffold_4G00286530 Rroxscaffold_4G00310890 Rroxscaffold_4G00310930 Rroxscaffold_6G00417350 Rroxscaffold_6G00417360 Rroxscaffold_6G00417370
rosa_rugosa	Rorug01G0357000 Rorug03G0057700 Rorug03G0057800 Rorug03G0057900 Rorug03G0058000 Rorug03G0058100 Rorug03G0058200
rosa_samantha	Rh1BG328500 Rh1CG341600 Rh1DG358800 Rh3AG115900 Rh3AG116000 Rh3AG116200 Rh3AG116300 Rh3BG119400 Rh3BG119500 Rh3BG119700 Rh3BG119800 Rh3CG122700 Rh3CG122800 Rh3CG123000 Rh3DG121500 Rh3DG121600 Rh3DG121700
rosa_wichuraiana	Rw3G009820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	47, 49
AciI	CCGC	3 cut(s)	49, 215, 270
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	83, 116
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	2 cut(s)	184, 238
AluI	AGCT	2 cut(s)	184, 238
Alw21I	GWGCWC	1 cut(s)	90
Alw44I	GTGCAC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	155, 192
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	39, 42, 238
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	47, 49
BaeGI	GKGCMC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	26, 29, 225
BccI	CCATC	2 cut(s)	250, 257
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BfaI	CTAG	2 cut(s)	233, 397
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	4 cut(s)	40, 43, 216, 239
BlsI	GCNGC	4 cut(s)	41, 44, 217, 240
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	125, 158
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
BseDI	CCNNGG	2 cut(s)	125, 158
BseGI	GGATG	2 cut(s)	199, 255
BsePI	GCGCGC	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	26, 29, 225
Bsh1236I	CGCG	2 cut(s)	47, 49
BshFI	GGCC	2 cut(s)	157, 194
BsiHKAI	GWGCWC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	157, 194
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	5, 10, 118
BspACI	CCGC	3 cut(s)	49, 215, 270
BspANI	GGCC	2 cut(s)	157, 194
BspFNI	CGCG	2 cut(s)	47, 49
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	125, 158
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	3 cut(s)	5, 10, 118
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	19, 92
BstC8I	GCNNGC	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	199, 255
BstFNI	CGCG	2 cut(s)	47, 49
BstHHI	GCGC	2 cut(s)	47, 49
BstKTI	GATC	3 cut(s)	8, 13, 121
BstMBI	GATC	3 cut(s)	5, 10, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	2 cut(s)	47, 49
BstV1I	GCAGC	3 cut(s)	26, 29, 225
BstX2I	RGATCY	2 cut(s)	5, 118
BstXI	CCANNNNNNTGG	2 cut(s)	132, 384
BstYI	RGATCY	2 cut(s)	5, 118
BsuRI	GGCC	2 cut(s)	157, 194
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	199, 255
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	2 cut(s)	47, 49
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	6 cut(s)	39, 157, 184, 194, 218, 238
CviKI_1	RGCY	6 cut(s)	39, 157, 184, 194, 218, 238
DpnI	GATC	3 cut(s)	7, 12, 120
DpnII	GATC	3 cut(s)	5, 10, 118
EaeI	YGGCCR	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	1 cut(s)	65
FaiI	YATR	2 cut(s)	63, 385
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	4 cut(s)	40, 43, 216, 239
FokI	GGATG	2 cut(s)	186, 262
Fsp4HI	GCNGC	4 cut(s)	40, 43, 216, 239
FspBI	CTAG	2 cut(s)	233, 397
GlaI	GCGC	2 cut(s)	46, 48
GluI	GCNGC	4 cut(s)	40, 43, 216, 239
HaeIII	GGCC	2 cut(s)	157, 194
HhaI	GCGC	2 cut(s)	47, 49
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	2 cut(s)	45, 47
HinP1I	GCGC	2 cut(s)	45, 47
HinfI	GANTC	2 cut(s)	177, 221
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	10, 226
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	2 cut(s)	19, 92
HpyCH4V	TGCA	2 cut(s)	88, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	2 cut(s)	45, 47
Kzo9I	GATC	3 cut(s)	5, 10, 118
LpnPI	CCDG	1 cut(s)	290
Lsp1109I	GCAGC	3 cut(s)	26, 29, 225
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	233, 397
MalI	GATC	3 cut(s)	7, 12, 120
MboI	GATC	3 cut(s)	5, 10, 118
MboII	GAAGA	2 cut(s)	113, 128
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	5, 118
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	3 cut(s)	322, 336, 392
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	28, 135, 184, 246, 338, 343
Mox20I	TGGCCA	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	157
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	157
MunI	CAATTG	1 cut(s)	336
MvnI	CGCG	2 cut(s)	47, 49
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	3 cut(s)	5, 10, 118
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	7
PauI	GCGCGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	41, 44, 217, 240
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	5, 118
PteI	GCGCGC	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	382
SatI	GCNGC	4 cut(s)	40, 43, 216, 239
Sau3AI	GATC	3 cut(s)	5, 10, 118
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	5 cut(s)	146, 164, 186, 240, 320
SfaNI	GCATC	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	382
Sse9I	AATT	3 cut(s)	322, 336, 392
SsiI	CCGC	3 cut(s)	49, 215, 270
SspMI	CTAG	2 cut(s)	233, 397
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	19, 92
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	322, 336, 392
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	39, 42, 238
TspGWI	ACGGA	2 cut(s)	203, 262
VneI	GTGCAC	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	233, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.